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BaseInfo

ncRNA ID	novel_zma_miR8510
Species	Zea mays
Class	miRNA
Genome position	Chr2:195302037-195302172 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AAUGAGAAUAACCGAACAAGACCU - 24
Stem-loop(if miRNA)	---G            GC     AUCCAU   A    AG     C    ----UGG   UAAAUCAUAAGC     CUUGUUCGGUUA  UCUCA      AUG AUUG  UGGGA UGGA       GUU            A     ||||||||||||  |||||      ||| ||||  ||||| ||||       |||     GAACAAGCCAAU  AGAGU      UAC UAAC  ACUCU AUCU       AUC            A UCCA            -A     AAUAUU   C    CU     A    UUUUUAA   UUCUUGAUACUG
Stem-loop sequence	GCUUGUUCGGUUAGCUCUCAAUCCAUAUGAAUUGAGUGGGACUGGAUGGGUUUAAAUCAUAAGCAAGUCAUAGUUCUUCUAAAUUUUUUCUAAUCUCAUCCAAUCCAUUUAUAAUGAGAAUAACCGAACAAGACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB167116.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*|||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*|||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*|||||||||||||||||||| targets:64   AGGCCUUGUUCGGUUAUUCUCAUU   87 Target Full Sequence	0.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008656621.2	ncRNA:24   UCCA-----GAACAAGCCAAUAAGAGUAA   1   ||||-----||||||||||||*||||||| targets:3360   AGGUUAGAACUUGUUCGGUUAGUCUCAUU   3388 Target Full Sequence	1.5	PREDICTED: Zea mays lon protease homolog, mitochondrial-like (LOC103634553), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008656616.2	ncRNA:24   UCCA-----GAACAAGCCAAUAAGAGUAA   1   ||||-----||||||||||||*||||||| targets:3447   AGGUUAGAACUUGUUCGGUUAGUCUCAUU   3475 Target Full Sequence	1.5	PREDICTED: Zea mays lon protease homolog, mitochondrial-like (LOC103634553), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001112112.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1701   AGGCUUUGUUCGGUUAUUCCCAUU   1724 Target Full Sequence	1.5	Zea mays nitrilase 1 (NIT1), transcript variant 1, mRNA	NA	coding protein	psRNATarget
AY156979.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1709   AGGCUUUGUUCGGUUAUUCCCAUU   1732 Target Full Sequence	1.5	Zea mays nitrilase 1 (NIT1) mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646066.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1742   AGGCUUUGUUCGGUUAUUCCCAUU   1765 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020537588.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1761   AGGCUUUGUUCGGUUAUUCCCAUU   1784 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008646063.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1779   AGGCUUUGUUCGGUUAUUCCCAUU   1802 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008646064.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1810   AGGCUUUGUUCGGUUAUUCCCAUU   1833 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537587.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:1828   AGGCUUUGUUCGGUUAUUCCCAUU   1851 Target Full Sequence	1.5	PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT066963.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||*=||||||||||||||*|||| targets:3091   AGGCUUUGUUCGGUUAUUCCCAUU   3114 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0126L13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ101233.1	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |*|*|||||||||||||||*|||| targets:38   AAGACUUGUUCGGUUAUUCCCAUU   61 Target Full Sequence	1.5	TSA: Zea mays contig36889, mRNA sequence	NA	coding protein	psRNATarget
XM_008667120.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||**|||||||||||||||||*| targets:860   AGGAAUUGUUCGGUUAUUCUCAAU   883 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100501429 (LOC100501429), mRNA	NA	coding protein	psRNATarget
XM_008666683.2	ncRNA:24   UCCAGAACAAGCCAAUAAGAGUAA   1   |||-||||||*|||||||||*||| targets:2515   AGG-CUUGUUGGGUUAUUCUAAUU   2537 Target Full Sequence	2.5	PREDICTED: Zea mays xyloglucan galactosyltransferase KATAMARI1 homolog (LOC103643503), mRNA	NA	coding protein	psRNATarget