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BaseInfo

ncRNA ID novel_zma_miR8502
Species Zea mays
Class miRNA
Genome position Chr1:79505884-79506019 [+]
Reference genome RefGen_v4
Source SRR4237220;SRR4237224
Length 24
Mature sequence(if miRNA) 113 - AAUGGGAUUAACCGAACAAGGCCU - 136
Stem-loop(if miRNA) -   -            C     --       -------       ------UG    AUUGGGUAAGUUUAAAUC
 GGU UUGUUCGGUUAG UCUCA  AUCCAUG       UGGAUUG        UGAG                  U
 ||| |||||||||||| |||||  |||||||       |||||||        ||||
 CCG AACAAGCCAAUU AGGGU  UGGGUAC       ACCUAAC        AUUC                  C
U   G            -     AA       UUAACCU       UUCUUUCA    UUUUUUAAACUGAAUGAA
Stem-loop sequence GGUUUGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGUGUGAGAUUGGGUAAGUUUAAAUCUCAAGUAAGUCAAAUUUUUUCUUAACUUUCUUCAAUCCAUCCAAUUCAUGGGUAAUGGGAUUAACCGAACAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ064093.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:100   AGGCCUUGUUCGGUUAAUCCCGUU   123

1.5 TSA: Zea mays contig65216, mRNA sequence NA coding protein psRNATarget
BT086633.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:367   AGGCCUUGUUCGGUUAAUCCCGUU   390

1.5 Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds NA coding protein psRNATarget
BT063416.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:1992   AGGCCUUGUUCGGUUAAUCCCGUU   2015

1.5 Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds NA coding protein psRNATarget
NM_001154362.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:2064   AGGCCUUGUUCGGUUAAUCCCGUU   2087

1.5 Zea mays protein kinase domain containing protein (LOC100281444), mRNA NA coding protein psRNATarget
EU956718.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:2065   AGGCCUUGUUCGGUUAAUCCCGUU   2088

1.5 Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds NA coding protein psRNATarget
XM_008674604.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:2193   AGGCCUUGUUCGGUUAAUCCCGUU   2216

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549704.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:2200   AGGCCUUGUUCGGUUAAUCCCGUU   2223

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020549703.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |||||||||||||||||||||=||
targets:2260   AGGCCUUGUUCGGUUAAUCCCGUU   2283

1.5 PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671671.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||*||||||||||||||||||=||
targets:1518   AGACCUUGUUCGGUUAAUCCCGUU   1541

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008671669.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||*||||||||||||||||||=||
targets:1542   AGACCUUGUUCGGUUAAUCCCGUU   1565

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008671670.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||*||||||||||||||||||=||
targets:1589   AGACCUUGUUCGGUUAAUCCCGUU   1612

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008671674.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||*||||||||||||||||||=||
targets:1674   AGACCUUGUUCGGUUAAUCCCGUU   1697

1.5 PREDICTED: Zea mays cytochrome c-type biogenesis ccda-like chloroplastic protein 2 (LOC103647117), transcript variant X5, mRNA NA coding protein psRNATarget
NM_001112112.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1701   AGGCUUUGUUCGGUUAUUCCCAUU   1724

1.5 Zea mays nitrilase 1 (NIT1), transcript variant 1, mRNA NA coding protein psRNATarget
AY156979.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1709   AGGCUUUGUUCGGUUAUUCCCAUU   1732

1.5 Zea mays nitrilase 1 (NIT1) mRNA, complete cds NA coding protein psRNATarget
XM_008646066.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1742   AGGCUUUGUUCGGUUAUUCCCAUU   1765

1.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020537588.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1761   AGGCUUUGUUCGGUUAUUCCCAUU   1784

1.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008646063.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1779   AGGCUUUGUUCGGUUAUUCCCAUU   1802

1.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008646064.2
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1810   AGGCUUUGUUCGGUUAUUCCCAUU   1833

1.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537587.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:1828   AGGCUUUGUUCGGUUAUUCCCAUU   1851

1.5 PREDICTED: Zea mays nitrilase 1 (NIT1), transcript variant X3, mRNA NA coding protein psRNATarget
BT066963.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  ||||=|||||||||||*|||||||
targets:3091   AGGCUUUGUUCGGUUAUUCCCAUU   3114

1.5 Zea mays full-length cDNA clone ZM_BFb0126L13 mRNA, complete cds NA coding protein psRNATarget
EZ101233.1
ncRNA:24   UCCGGAACAAGCCAAUUAGGGUAA   1
  |*|*||||||||||||*|||||||
targets:38   AAGACUUGUUCGGUUAUUCCCAUU   61

1.5 TSA: Zea mays contig36889, mRNA sequence NA coding protein psRNATarget
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