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BaseInfo

ncRNA ID	novel_zma_miR8499
Species	Zea mays
Class	miRNA
Genome position	Chr1:5585602-5585720 [+]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	96 - AUCAUAUAUGUAAGACUUGAUCCU - 119
Stem-loop(if miRNA)	--     UU     -   --      - AAUUAUUAA    -- UUU   CAGAACUCUUAUUAUAUA   GAUCG  GUCUU CAU  GUGAUG C         GCUA  U   GUA                  G   |||||  ||||| |||  |||||| |         ||||  |   |||                  U   CUAGU  CAGAA GUA  UACUAC G         AUAC  U   GUA                  A UC     -U     U   UA      U --------A    CA ---   UUUGCUUACAGUAUAAAA
Stem-loop sequence	GAUCGUUGUCUUCAUGUGAUGCAAUUAUUAAGCUAUUUUGUACAGAACUCUUAUUAUAUAGUAAAAAUAUGACAUUCGUUUAUGUACCAUAAGUCAUCAUAUAUGUAAGACUUGAUCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541829.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   |*||||||||=|||||*||||||| targets:2666   AUGAUCAAGUUUUACACAUAUGAU   2689 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191249 (LOC100191249), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT067609.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   |*||||||||=|||||*||||||| targets:2145   AUGAUCAAGUUUUACACAUAUGAU   2168 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0097K11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136683.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   |*||||||||=|||||*||||||| targets:1560   AUGAUCAAGUUUUACACAUAUGAU   1583 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191249 (LOC100191249), mRNA	NA	coding protein	psRNATarget
BT033287.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   |*||||||||=|||||*||||||| targets:1560   AUGAUCAAGUUUUACACAUAUGAU   1583 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0128N11 mRNA, complete cds	NA	coding protein	psRNATarget
EU966329.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   |*||||||||=|||||*||||||| targets:1363   AUGAUCAAGUUUUACACAUAUGAU   1386 Target Full Sequence	2.5	Zea mays clone 293673 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT055690.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   *||--||||*=||||||||||||| targets:2054   UGG--CAAGAUUUACAUAUAUGAU   2075 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0118L04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153096.1	ncRNA:24   UCCUAGUUCAGAAUGUAUAUACUA   1   *||--||||*=||||||||||||| targets:2054   UGG--CAAGAUUUACAUAUAUGAU   2075 Target Full Sequence	2.0	Zea mays uncharacterized LOC100280164 (sdg101), mRNA	NA	coding protein	psRNATarget