Search result

BaseInfo

ncRNA ID	novel_zma_miR8495
Species	Zea mays
Class	miRNA
Genome position	Chr1:17155057-17155118 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237221;SRR4237222;SRR4237223;SRR4237224;SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AUUAGUUGAGACAUCCAAACACCU - 24
Stem-loop(if miRNA)	--           CA  G  G     A        GUGUUUGGAUG  CU GA CUAAU UUUAGU   |||||||||||  || || ||||| |||||G   CACAAACCUAC  GA UU GAUUA AAAUCU UC           -A  G  -     -
Stem-loop sequence	GUGUUUGGAUGCACUGGAGCUAAUAUUUAGUGUCUAAAAUUAGUUGAGACAUCCAAACACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163498.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   =|||||||||||||=||||||||| targets:140   GGGUGUUUGGAUGUUUCAACUAAU   163 Target Full Sequence	1.5	Sequence 1162 from Patent EP2559767	NA	coding protein	psRNATarget
HI403037.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   =|||||||||||||=||||||||| targets:140   GGGUGUUUGGAUGUUUCAACUAAU   163 Target Full Sequence	1.5	Sequence 1162 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235167.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   =|||||||||||||=||||||||| targets:140   GGGUGUUUGGAUGUUUCAACUAAU   163 Target Full Sequence	1.5	Sequence 1162 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UCCACAAACCUACAGAG-UUGAUUA   1   =||||||||||||||||-||||||| targets:1238   GGGUGUUUGGAUGUCUCUAACUAAU   1262 Target Full Sequence	3.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU953408.1	ncRNA:24   UCCACAAACCUACAGAG-UUGAUUA   1   =||||||||||||||||-||||||| targets:1412   GGGUGUUUGGAUGUCUCCAACUAAU   1436 Target Full Sequence	3.0	Zea mays clone 1408713 mRNA sequence	NA	coding protein	psRNATarget
XM_008658477.2	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   *|*||||||||||||||||||||| targets:4365   UGAUGUUUGGAUGUCUCAACUAAU   4388 Target Full Sequence	0.0	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542354.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   *|*||||||||||||||||||||| targets:4365   UGAUGUUUGGAUGUCUCAACUAAU   4388 Target Full Sequence	0.0	PREDICTED: Zea mays peptide deformylase 1B, chloroplastic (LOC103636114), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649989.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2548   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2574 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008649992.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2505   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2531 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008649987.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2457   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2483 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008649990.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2413   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2439 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008649993.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2386   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2412 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020539133.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2386   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2412 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020539137.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2374   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2400 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008649991.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2360   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2386 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539132.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2360   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2386 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008649988.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2356   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2382 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008649994.2	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2343   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2369 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020539134.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2317   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2343 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020539135.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2292   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2318 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020539136.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:2178   GGGAUCUGUUUAGAUGUCUCAGCUAAU   2204 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100384849), transcript variant X13, mRNA	NA	coding protein	psRNATarget
EU940937.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:39   GGGAUCUGUUUAGAUGUCUCAGCUAAU   65 Target Full Sequence	2.5	Zea mays clone 1217419 mRNA sequence	NA	coding protein	psRNATarget
NM_001177285.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:122   GGGAUCUGUUUAGAUGUCUCAGCUAAU   148 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100384849), mRNA	NA	coding protein	psRNATarget
BT084360.1	ncRNA:24   UCC---ACAAACCUACAGAGUUGAUUA   1   =||---|||||*|||||||||=||||| targets:122   GGGAUCUGUUUAGAUGUCUCAGCUAAU   148 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105N16 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235112.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   **|||||*|||*|||||||||||| targets:141   UAGUGUUCGGACGUCUCAACUAAU   164 Target Full Sequence	2.5	Sequence 1107 from Patent EP2985353	NA	coding protein	psRNATarget
HI402982.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   **|||||*|||*|||||||||||| targets:141   UAGUGUUCGGACGUCUCAACUAAU   164 Target Full Sequence	2.5	Sequence 1107 from Patent EP2074227	NA	coding protein	psRNATarget
JB163443.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   **|||||*|||*|||||||||||| targets:141   UAGUGUUCGGACGUCUCAACUAAU   164 Target Full Sequence	2.5	Sequence 1107 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020546520.1	ncRNA:24   UCCACAAACCUACAGAGUUGAUUA   1   |****|||||||||||||||||** targets:948   AACCUUUUGGAUGUCUCAACUACA   971 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640528 (LOC103640528), transcript variant X1, mRNA	NA	coding protein	psRNATarget