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BaseInfo

ncRNA ID novel_zma_miR8490
Species Zea mays
Class miRNA
Genome position Chr1:77070232-77070281 [-]
Reference genome RefGen_v4
Source SRR4237220;SRR4237225
Length 24
Mature sequence(if miRNA) 1 - CGUUACCGAGAGCAGAACUUUGCC - 24
Stem-loop(if miRNA) --G     C       -     A  U
   AGAGU CUGCUCU GGUAA CG A
   ||||| ||||||| ||||| ||
   UUUCA GACGAGA CCAUU GC G
CCG     A       G     -  U
Stem-loop sequence GAGAGUCCUGCUCUGGUAAACGUAGUCGUUACCGAGAGCAGAACUUUGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170315.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||||||*||||||||*||||||
targets:18   GGCAAAGUCCUGCUCUCAGUAACG   41

2.5 Sequence 7979 from Patent EP2559767 NA coding protein psRNATarget
LQ241984.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||||||*||||||||*||||||
targets:18   GGCAAAGUCCUGCUCUCAGUAACG   41

2.5 Sequence 7979 from Patent EP2985353 NA coding protein psRNATarget
HI409854.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||||||*||||||||*||||||
targets:18   GGCAAAGUCCUGCUCUCAGUAACG   41

2.5 Sequence 7979 from Patent EP2074227 NA coding protein psRNATarget
HI409737.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||*|||*||*||||||||||||
targets:5   GGCAUAGUCCUACUCUCGGUAACG   28

2.5 Sequence 7862 from Patent EP2074227 NA coding protein psRNATarget
JB170198.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||*|||*||*||||||||||||
targets:5   GGCAUAGUCCUACUCUCGGUAACG   28

2.5 Sequence 7862 from Patent EP2559767 NA coding protein psRNATarget
LQ241867.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||||*|||*||*||||||||||||
targets:5   GGCAUAGUCCUACUCUCGGUAACG   28

2.5 Sequence 7862 from Patent EP2985353 NA coding protein psRNATarget
EU965819.1
ncRNA:24   CCGUUUCAAGACGAGAGCCAUUGC   1
  ||*|||||*=*|||||||||||||
targets:736   GGGAAAGUGUGGCUCUCGGUAACG   759

3.0 Zea mays clone 289187 mRNA sequence NA coding protein psRNATarget
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