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BaseInfo

ncRNA ID	novel_zma_miR8479
Species	Zea mays
Class	miRNA
Genome position	Chr1:199989909-199990094 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	1 - CUAGAAACCAAACACCCACUUAGU - 24
Stem-loop(if miRNA)	---UAGA             A          ACA          CAC                  A              G                    GGGUGUUUGGUUU UAGGGACUAA   UUAGUCCCUC   UUUAUUCCAUUUUAGUUC UAAAUUGUUAAAUA GGAAACUAAAAUA        ||||||||||||| ||||||||||   ||||||||||   |||||||||||||||||| |||||||||||||| ||||||||||||G        CCCACAAACCAAA AUCCCUGAUU   AAUCAGGGAG   AAAUAAGGUAAAAUCAGG AUUUAAUGAUUUAU UCUUUGAUUUUGA UGAUUCA             G          AAA          UUA                  G              A
Stem-loop sequence	UAGAGGGUGUUUGGUUUAUAGGGACUAAACAUUAGUCCCUCCACUUUAUUCCAUUUUAGUUCAUAAAUUGUUAAAUAGGGAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUAGUAAUUUAGGGACUAAAAUGGAAUAAAAUUGAGGGACUAAAAAUUAGUCCCUAGAAACCAAACACCCACUUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ060524.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||||||*||||||||||||||||| targets:35   ACUAAGGGGGUGUUUGGUUUCUAG   58 Target Full Sequence	1.0	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||||||*||||||||||||||||| targets:543   ACUAAGGGGGUGUUUGGUUUCUAG   566 Target Full Sequence	1.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*|||||||||||||||||||| targets:1137   ACUUAGUGGGUGUUUGGUUUCUAG   1160 Target Full Sequence	0.0	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |=|*=||||||||||||||||||| targets:1532   AUUUGGUGGGUGUUUGGUUUCUAG   1555 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||||*||||||||||||||||| targets:1128   CUUAAGGGGGUGUUUGGUUUCUAG   1151 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||||*||||||||||||||||| targets:1137   CUUAAGGGGGUGUUUGGUUUCUAG   1160 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||||*||||||||||||||||| targets:1140   CUUAAGGGGGUGUUUGGUUUCUAG   1163 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||||*||||||||||||||||| targets:1146   CUUAAGGGGGUGUUUGGUUUCUAG   1169 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
DQ244473.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |*||||*||||||||||||||||| targets:958   AAUAAGGGGGUGUUUGGUUUCUAG   981 Target Full Sequence	1.0	Zea mays clone 8025 mRNA sequence	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*||*||||||||||||||||| targets:806   ACUUAGGGGGUGUUUGGUUUCUAG   829 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*||*||||||||||||||||| targets:806   ACUUAGGGGGUGUUUGGUUUCUAG   829 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*||*||||||||||||||||| targets:1233   ACUUAGGGGGUGUUUGGUUUCUAG   1256 Target Full Sequence	1.0	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*||*||||||||||||||||| targets:1913   ACUUAGGGGGUGUUUGGUUUCUAG   1936 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   **||||*||||||||||||||||| targets:743   UGUAAGGGGGUGUUUGGUUUCUAG   766 Target Full Sequence	1.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
XM_020542419.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   **||||*||||||||||||||||| targets:2135   UGUAAGGGGGUGUUUGGUUUCUAG   2158 Target Full Sequence	1.0	PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||=|*||||||||||||||||| targets:456   UUUAGGGGGGUGUUUGGUUUCUAG   479 Target Full Sequence	1.0	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EU961152.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |=|*||*||||||||||||||||| targets:530   AUUUAGAGGGUGUUUGGUUUCUAG   553 Target Full Sequence	1.0	Zea mays clone 232918 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150110.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |=|*||*||||||||||||||||| targets:530   AUUUAGAGGGUGUUUGGUUUCUAG   553 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC103639532), mRNA	NA	coding protein	psRNATarget
NM_001313850.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*=|*||||||||||||||||| targets:1130   ACUUGGGGGGUGUUUGGUUUCUAG   1153 Target Full Sequence	1.0	Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA	NA	coding protein	psRNATarget
BT088358.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*=|*||||||||||||||||| targets:1130   ACUUGGGGGGUGUUUGGUUUCUAG   1153 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |=|||**||||||||||||||||| targets:911   AUUAAAGGGGUGUUUGGUUUCUAG   934 Target Full Sequence	2.0	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |||*=|*||||||||||||||||| targets:1184   ACUUGGGGGGUGUUUGGUUUCUAG   1207 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
EU957613.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||||=|*|||||||||||||*||| targets:619   ACUAGGAGGGUGUUUGGUUUGUAG   642 Target Full Sequence	2.5	Zea mays clone 1599137 mRNA sequence	NA	coding protein	psRNATarget
XM_008676145.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |*|||||*|||||||||||||||* targets:821   AAUAAGUAGGUGUUUGGUUUCUAU   844 Target Full Sequence	2.0	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
BT018699.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   |=*|||*|||||||||||||=||| targets:1225   AUGAAGGGGGUGUUUGGUUUUUAG   1248 Target Full Sequence	2.5	Zea mays clone EL01N0514H05.d mRNA sequence	NA	coding protein	psRNATarget
XM_008656457.2	ncRNA:24   UGAU-UCACCCACAAACCAAAGAUC   1   =|||-||*||||||||||||||||* targets:1635   GCUAUAGGGGGUGUUUGGUUUCUAA   1659 Target Full Sequence	2.0	PREDICTED: Zea mays programmed cell death protein 2 (LOC103634523), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ111881.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *||*||*|||||||||||||=||| targets:75   UCUCAGGGGGUGUUUGGUUUUUAG   98 Target Full Sequence	2.5	TSA: Zea mays contig47542, mRNA sequence	NA	coding protein	psRNATarget
BT016605.1	ncRNA:24   UGAU--UCACCCACAAACCAAAGAUC   1   ||||--||*|||||||||||||*||| targets:945   ACUAUAAGGGGGUGUUUGGUUUGUAG   970 Target Full Sequence	2.5	Zea mays clone Contig438 mRNA sequence	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *=||||*|||||||||||||*||| targets:2897   CUUAAGGGGGUGUUUGGUUUGUAG   2920 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
NM_001154575.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||||||**|*|||||||||||||| targets:1852   ACUAAGGAGAUGUUUGGUUUCUAG   1875 Target Full Sequence	3.0	Zea mays uncharacterized LOC100281656 (si605087c09), mRNA	NA	coding protein	psRNATarget
EU957463.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||||||**|*|||||||||||||| targets:1853   ACUAAGGAGAUGUUUGGUUUCUAG   1876 Target Full Sequence	3.0	Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds	NA	coding protein	psRNATarget
HI406614.1	ncRNA:24   UGAU----UCACCCACAAACCAAAGAUC   1   ||||----||*|||||||||||||*||| targets:117   ACUACCUUAGGGGGUGUUUGGUUUAUAG   144 Target Full Sequence	2.5	Sequence 4739 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238744.1	ncRNA:24   UGAU----UCACCCACAAACCAAAGAUC   1   ||||----||*|||||||||||||*||| targets:117   ACUACCUUAGGGGGUGUUUGGUUUAUAG   144 Target Full Sequence	2.5	Sequence 4739 from Patent EP2985353	NA	coding protein	psRNATarget
JB167075.1	ncRNA:24   UGAU----UCACCCACAAACCAAAGAUC   1   ||||----||*|||||||||||||*||| targets:117   ACUACCUUAGGGGGUGUUUGGUUUAUAG   144 Target Full Sequence	2.5	Sequence 4739 from Patent EP2559767	NA	coding protein	psRNATarget
BT083561.2	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   =||*||*|||||||||*||||||| targets:168   GCUUAGAGGGUGUUUGAUUUCUAG   191 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   =||*||*|||||||||*||||||| targets:165   GCUUAGAGGGUGUUUGAUUUCUAG   188 Target Full Sequence	2.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||-|||*||*|||||||||||||| targets:552   AC-AAGGGGAUGUUUGGUUUCUAG   574 Target Full Sequence	2.0	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||-|||*||*|||||||||||||| targets:3396   AC-AAGGGGAUGUUUGGUUUCUAG   3418 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||-|||*||*|||||||||||||| targets:3471   AC-AAGGGGAUGUUUGGUUUCUAG   3493 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||-|||*||*|||||||||||||| targets:3521   AC-AAGGGGAUGUUUGGUUUCUAG   3543 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   ||-|||*||*|||||||||||||| targets:3558   AC-AAGGGGAUGUUUGGUUUCUAG   3580 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU946945.1	ncRNA:24   UGAUUCACCCACAAACCAAAGAUC   1   *||*||||*||||||*|||||||| targets:560   UCUUAGUGAGUGUUUAGUUUCUAG   583 Target Full Sequence	2.5	Zea mays clone 325236 mRNA sequence	NA	coding protein	psRNATarget