Search result

BaseInfo

ncRNA ID novel_zma_miR8478
Species Zea mays
Class miRNA
Genome position Chr1:33543746-33543871 [+]
Reference genome RefGen_v4
Source SRR4237220
Length 24
Mature sequence(if miRNA) 103 - AUCCGGUACAAACGAACAAGACCU - 126
Stem-loop(if miRNA) --GC           ACG        --CACCA     -CG   C   UA UCAA     -A  U
    CUUGUUCGUUU   UCGGAUUG       GGAAU   UUC AGC  A    AGUUU  UA A
    |||||||||||   ||||||||       |||||   ||| |||  |    |||||  || A
    GAACAAGCAAA   GGCCUAAC       CCUUG   AAG UCG  U    UCAAG  AU U
UCCA           CAU        UACCUAG     CUA   U   GC -UAA     AG  U
Stem-loop sequence GCCUUGUUCGUUUACGUCGGAUUGCACCAGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAUUUAGAGAACUAAUUCGGCUUGAAAUCGUUCCGAUCCAUCAAUCCGGUACAAACGAACAAGACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ238081.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
JB166412.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
HI405951.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:7   AGGUCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
HI405930.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2074227 NA coding protein psRNATarget
JB166391.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2559767 NA coding protein psRNATarget
LQ238060.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:11   AGGUCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 4055 from Patent EP2985353 NA coding protein psRNATarget
BT017671.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:869   AGGUCUUGUUCGUUUGUGCCGGAU   892

1.5 Zea mays clone EL01N0442B02.c mRNA sequence NA coding protein psRNATarget
XM_020549216.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:138   AGGUCUUGUUCGUUUGUGCCGGAU   161

1.5 PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA NA coding protein psRNATarget
XM_020550140.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675573.2
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||||||||||||||||=||||||
targets:3429   AGGUCUUGUUCGUUUGUGCCGGAU   3452

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA NA coding protein psRNATarget
JB166397.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2559767 NA coding protein psRNATarget
LQ238069.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2985353 NA coding protein psRNATarget
LQ238070.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2985353 NA coding protein psRNATarget
HI405940.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2074227 NA coding protein psRNATarget
JB166400.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2559767 NA coding protein psRNATarget
HI405945.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2074227 NA coding protein psRNATarget
LQ238066.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2985353 NA coding protein psRNATarget
JB166406.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2559767 NA coding protein psRNATarget
JB166401.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4065 from Patent EP2559767 NA coding protein psRNATarget
HI405936.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4061 from Patent EP2074227 NA coding protein psRNATarget
HI405939.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4064 from Patent EP2074227 NA coding protein psRNATarget
LQ238075.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4070 from Patent EP2985353 NA coding protein psRNATarget
LQ238062.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2985353 NA coding protein psRNATarget
LQ238063.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2985353 NA coding protein psRNATarget
JB166393.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2559767 NA coding protein psRNATarget
HI405933.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2074227 NA coding protein psRNATarget
HI405932.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGGCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4057 from Patent EP2074227 NA coding protein psRNATarget
JB166394.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:10   AGGCCUUGUUCGUUUGUGCCGGAU   33

1.5 Sequence 4058 from Patent EP2559767 NA coding protein psRNATarget
HI407238.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2074227 NA coding protein psRNATarget
LQ239368.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2985353 NA coding protein psRNATarget
JB167699.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGGCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 5363 from Patent EP2559767 NA coding protein psRNATarget
HI405804.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2074227 NA coding protein psRNATarget
LQ237934.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2985353 NA coding protein psRNATarget
JB166265.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:11   AGGCCUUGUUCGUUUGUGCCGGAU   34

1.5 Sequence 3929 from Patent EP2559767 NA coding protein psRNATarget
LQ238078.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2985353 NA coding protein psRNATarget
JB166409.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2559767 NA coding protein psRNATarget
HI405948.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:7   AGGCCUUGUUCGUUUGUGCCGGAU   30

1.5 Sequence 4073 from Patent EP2074227 NA coding protein psRNATarget
EU942882.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:71   AGGCCUUGUUCGUUUGUGCCGGAU   94

1.5 Zea mays clone 1543225 mRNA sequence NA coding protein psRNATarget
EZ109082.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:14   AGGCCUUGUUCGUUUGUGCCGGAU   37

1.5 TSA: Zea mays contig44741, mRNA sequence NA coding protein psRNATarget
BT017425.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||||||||=|||||
targets:757   AGGCCUUGUUCGUUUGUAUCGGAU   780

1.5 Zea mays clone EL01N0402H01.c mRNA sequence NA coding protein psRNATarget
EU953779.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:620   AGGCCUUGUUCGUUUGUGCCGGAU   643

1.5 Zea mays clone 1445891 mRNA sequence NA coding protein psRNATarget
BT063869.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||||||||=|||||
targets:822   AGGCCUUGUUCGUUUGUAUCGGAU   845

1.5 Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds NA coding protein psRNATarget
AY107168.2
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:857   AGGCCUUGUUCGUUUGUGCCGGAU   880

1.5 Zea mays PCO087750 mRNA sequence NA coding protein psRNATarget
NM_001138362.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA NA coding protein psRNATarget
BT035415.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:1418   AGGCCUUGUUCGUUUGUGCCGGAU   1441

1.5 Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds NA coding protein psRNATarget
BT066445.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||||||||=|||||
targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875

1.5 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
NM_001175834.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||||||||=|||||
targets:852   AGGCCUUGUUCGUUUGUAUCGGAU   875

1.5 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
XM_020538690.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||||=||||||
targets:4118   AGGCCUUGUUCGUUUGUGCCGGAU   4141

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA NA coding protein psRNATarget
EZ061700.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*=||||||||||||=||||||
targets:88   AGGCUUUGUUCGUUUGUGCCGGAU   111

1.5 TSA: Zea mays contig62822, mRNA sequence NA coding protein psRNATarget
XM_020543230.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||*||||||||
targets:625   AGGCCUUGUUCGUUUCUACCGGAU   648

1.5 PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 39 (LOC103636418), mRNA NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||*||||||||
targets:714   AGGCCUUGUUCGUUUCUACCGGAU   737

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*|||||||||||*||||||||
targets:809   AGGCCUUGUUCGUUUCUACCGGAU   832

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
AY107839.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||-|||||||||||||=|||||*
targets:1177   AGG-CUUGUUCGUUUGUGCCGGAN   1199

2.5 Zea mays PCO143146 mRNA sequence NA coding protein psRNATarget
XM_020548712.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2055   AGACCUUGUUCGUUUGUGCCGGAU   2078

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008672661.2
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2137   AGACCUUGUUCGUUUGUGCCGGAU   2160

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548713.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2150   AGACCUUGUUCGUUUGUGCCGGAU   2173

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008672662.2
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2179   AGACCUUGUUCGUUUGUGCCGGAU   2202

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008672660.2
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2211   AGACCUUGUUCGUUUGUGCCGGAU   2234

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548714.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||=||||||
targets:2260   AGACCUUGUUCGUUUGUGCCGGAU   2283

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X5, mRNA NA coding protein psRNATarget
JB163483.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||*||||||||||*
targets:2   AGGGCUUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1147 from Patent EP2559767 NA coding protein psRNATarget
HI403022.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||*||||||||||*
targets:2   AGGGCUUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1147 from Patent EP2074227 NA coding protein psRNATarget
LQ235152.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  |||*||||||||*||||||||||*
targets:2   AGGGCUUGUUCGGUUGUACCGGAA   25

2.5 Sequence 1147 from Patent EP2985353 NA coding protein psRNATarget
JB166550.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||*||||||||
targets:11   AGACCUUGUUCGUUUCUACCGGAU   34

1.5 Sequence 4214 from Patent EP2559767 NA coding protein psRNATarget
LQ238219.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||*||||||||
targets:11   AGACCUUGUUCGUUUCUACCGGAU   34

1.5 Sequence 4214 from Patent EP2985353 NA coding protein psRNATarget
HI406089.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||*||||||||
targets:11   AGACCUUGUUCGUUUCUACCGGAU   34

1.5 Sequence 4214 from Patent EP2074227 NA coding protein psRNATarget
XM_020544148.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||||||*||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020544147.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||||||*||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544149.1
ncRNA:24   UCCAGAACAAGCAAACAUGGCCUA   1
  ||**|||||||||||||||||*||
targets:1154   AGCCCUUGUUCGUUUGUACCGAAU   1177

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X5, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.