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BaseInfo

ncRNA ID	novel_zma_miR8472
Species	Zea mays
Class	miRNA
Genome position	Chr1:286168031-286168235 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	1 - GAACGAUUCCGGGUGUAAUCCGAU - 24
Stem-loop(if miRNA)	--                         C         C                                            C          C   -AA GA   CGGAUUGCACCCGGAAUCGUUCCAG UAAUCAAAG UUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACC ACCAAUCUGG GCA   C  A   ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||   |   GCCUAAUGUGGGCCUUAGCAAGGUC AUUAGUUUC AAUAUAUUUAAUCUCUUCGUUAGGCCAAUCCUUAGCAAGGCUGG UGGUUAGGCC UGU   G  C UA                         U         A                                            C          C   CCG AA
Stem-loop sequence	CGGAUUGCACCCGGAAUCGUUCCAGCUAAUCAAAGCUUAUAUAAAUUAGAGAAGCAAUCCGGUUAGGAAUCGUUCCGACCCACCAAUCUGGCGCAAACGAACAAGGCCUGUCCCGGAUUGGUCGGUCGGAACGAUUCCUAACCGGAUUGCUUCUCUAAUUUAUAUAAACUUUGAUUAUCUGGAACGAUUCCGGGUGUAAUCCGAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166387.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4051 from Patent EP2559767	NA	coding protein	psRNATarget
HI405926.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4051 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238034.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4029 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238056.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4051 from Patent EP2985353	NA	coding protein	psRNATarget
JB166365.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4029 from Patent EP2559767	NA	coding protein	psRNATarget
HI405904.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:18   AUCGGAUUGCACCCGGAAUCGUUC   41 Target Full Sequence	1.0	Sequence 4029 from Patent EP2074227	NA	coding protein	psRNATarget
HI405964.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:26   AUCGGAUUGCACCCGGAAUCGUUC   49 Target Full Sequence	1.0	Sequence 4089 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238094.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:26   AUCGGAUUGCACCCGGAAUCGUUC   49 Target Full Sequence	1.0	Sequence 4089 from Patent EP2985353	NA	coding protein	psRNATarget
JB166425.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:26   AUCGGAUUGCACCCGGAAUCGUUC   49 Target Full Sequence	1.0	Sequence 4089 from Patent EP2559767	NA	coding protein	psRNATarget
AY109343.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=||||||||||||||| targets:677   AUCGGAUUGCACCCGGAAUCGUUC   700 Target Full Sequence	1.0	Zea mays CL1155_3 mRNA sequence	NA	coding protein	psRNATarget
HI409560.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:73   GUCGGAUUGCACCCGGAAUCGUUC   96 Target Full Sequence	1.0	Sequence 7685 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241690.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:73   GUCGGAUUGCACCCGGAAUCGUUC   96 Target Full Sequence	1.0	Sequence 7685 from Patent EP2985353	NA	coding protein	psRNATarget
JB170021.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:73   GUCGGAUUGCACCCGGAAUCGUUC   96 Target Full Sequence	1.0	Sequence 7685 from Patent EP2559767	NA	coding protein	psRNATarget
EZ095711.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   |||||||||=|=|||||||||||| targets:57   AUCGGAUUAUAUCCGGAAUCGUUC   80 Target Full Sequence	2.5	TSA: Zea mays contig31364, mRNA sequence	NA	coding protein	psRNATarget
HI405937.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:19   GUCGGAUUGCACCCGGAAUCGUUC   42 Target Full Sequence	1.0	Sequence 4062 from Patent EP2074227	NA	coding protein	psRNATarget
JB166398.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:19   GUCGGAUUGCACCCGGAAUCGUUC   42 Target Full Sequence	1.0	Sequence 4062 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238067.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:19   GUCGGAUUGCACCCGGAAUCGUUC   42 Target Full Sequence	1.0	Sequence 4062 from Patent EP2985353	NA	coding protein	psRNATarget
EZ050562.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:64   GUCGGAUUGCACCCGGAAUCGUUC   87 Target Full Sequence	1.0	TSA: Zea mays contig51682, mRNA sequence	NA	coding protein	psRNATarget
BT083852.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:370   GUCGGAUUGCACCCGGAAUCGUUC   393 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0047A08 mRNA, complete cds	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:571   GUCGGAUUGCACCCGGAAUCGUUC   594 Target Full Sequence	1.0	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
EU971977.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =||||||||||||||||||||||= targets:740   GUCGGAUUACACCCGGAAUCGUUU   763 Target Full Sequence	1.0	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008652540.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1375   GUCGGAUUGCACCCGGAAUCGUUC   1398 Target Full Sequence	1.0	PREDICTED: Zea mays plasma membrane-bound peroxidase 2b (PER70), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1742   GUCGGAUUGCACCCGGAAUCGUUC   1765 Target Full Sequence	1.0	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
EU973341.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1742   GUCGGAUUGCACCCGGAAUCGUUC   1765 Target Full Sequence	1.0	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654032.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:936   GUCGGAUUGCACCCGGAAUCGUUC   959 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT068430.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:470   GUCGGAUUGCACCCGGAAUCGUUC   493 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1838   GUCGGAUUGCACCCGGAAUCGUUC   1861 Target Full Sequence	1.0	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1912   GUCGGAUUGCACCCGGAAUCGUUC   1935 Target Full Sequence	1.0	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:1930   GUCGGAUUGCACCCGGAAUCGUUC   1953 Target Full Sequence	1.0	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:2006   GUCGGAUUGCACCCGGAAUCGUUC   2029 Target Full Sequence	1.0	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:2599   GUCGGAUUGCACCCGGAAUCGUUC   2622 Target Full Sequence	1.0	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:2602   GUCGGAUUGCACCCGGAAUCGUUC   2625 Target Full Sequence	1.0	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||||||| targets:6451   GUCGGAUUGCACCCGGAAUCGUUC   6474 Target Full Sequence	1.0	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ516643.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=|||=||||||||||| targets:152   GUCGGAUUGCACUCGGAAUCGUUC   175 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
EZ060491.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=||||||||||=|||| targets:141   GUCGGAUUGCACCCGGAAUUGUUC   164 Target Full Sequence	2.5	TSA: Zea mays contig61613, mRNA sequence	NA	coding protein	psRNATarget
EZ063705.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||||||||*||||||||| targets:264   GUCGGAUUACACCCAGAAUCGUUC   287 Target Full Sequence	1.5	TSA: Zea mays contig64827, mRNA sequence	NA	coding protein	psRNATarget
NM_001153908.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=|||||||||||*||| targets:1103   AUCGGAUUGCACCCGGAAUCAUUC   1126 Target Full Sequence	2.5	Zea mays plant-specific domain TIGR01627 family protein (LOC100280988), mRNA	NA	coding protein	psRNATarget
EU955083.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||=|||||||||||*||| targets:1103   AUCGGAUUGCACCCGGAAUCAUUC   1126 Target Full Sequence	2.5	Zea mays clone 1508988 plant-specific domain TIGR01627 family protein mRNA, complete cds	NA	coding protein	psRNATarget
BT066464.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||||||||||||||*||= targets:1183   AUCGGAUUACACCCGGAAUCAUUU   1206 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0001K21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666870.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   ||||||||||||||||||||*||= targets:1610   AUCGGAUUACACCCGGAAUCAUUU   1633 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor eIF-2B subunit delta (LOC100217034), mRNA	NA	coding protein	psRNATarget
EU941248.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =||||||*=||||||||||||||| targets:131   GUCGGAUCGCACCCGGAAUCGUUC   154 Target Full Sequence	2.0	Zea mays clone 1431203 mRNA sequence	NA	coding protein	psRNATarget
EU957814.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||*|||=||||||||||||||| targets:1000   GUCGAAUUGCACCCGGAAUCGUUC   1023 Target Full Sequence	1.0	Zea mays clone 1624339 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538654.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|||||||=|||||||||||*||| targets:780   GUCGGAUUGCACCCGGAAUCAUUC   803 Target Full Sequence	2.5	PREDICTED: Zea mays polyamine transporter PUT1 (LOC103643034), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540976.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =||||||*=||||||||||||||| targets:4429   GUCGGAUCGCACCCGGAAUCGUUC   4452 Target Full Sequence	2.0	PREDICTED: Zea mays indole-3-acetaldehyde oxidase-like (LOC103631977), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974791.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =*||||||=||||=|||||||||| targets:487   GCCGGAUUGCACCUGGAAUCGUUC   510 Target Full Sequence	2.5	Zea mays clone 458239 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975407.1	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =*||||||=||||=|||||||||| targets:486   GCCGGAUUGCACCUGGAAUCGUUC   509 Target Full Sequence	2.5	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654752.2	ncRNA:24   UAGCCUAAUGUGGGCCUUAGCAAG   1   =|=|||||=|||||*||||||||| targets:2688   GUUGGAUUGCACCCAGAAUCGUUC   2711 Target Full Sequence	2.5	PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 35 (LOC103633070), mRNA	NA	coding protein	psRNATarget