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BaseInfo

ncRNA ID	novel_zma_miR8459
Species	Zea mays
Class	miRNA
Genome position	Chr9:6129651-6129790 [-]
Reference genome	RefGen_v4
Source	SRR4237220
Length	24
Mature sequence(if miRNA)	1 - AGAUUGGUGUAACCGAACAAGACC - 24
Stem-loop(if miRNA)	--GCA                  C   ----------          A              UUAAACCUCUCC     CC      UGUUCGGUUACACCAAUC AGA          AGGGGAUUAA UCCCCUCCUAGUCA            AAUCC  U      |||||||||||||||||| |||          |||||||||| ||||||||||||||            |||||      ACAAGCCAAUGUGGUUAG UCU          UCCCCUAAUU AGGGGAGGAUCAGU            UUAGG  U CCAGA                  A   UGCCCUAACC          -              -----------U     UC
Stem-loop sequence	GCAUGUUCGGUUACACCAAUCCAGAAGGGGAUUAAAUCCCCUCCUAGUCAUUAAACCUCUCCAAUCCCCUUCUGGAUUUUGACUAGGAGGGGAUUAAUCCCCUCCAAUCCCGUUCUAGAUUGGUGUAACCGAACAAGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||||||||||||||* targets:36   GGGCUUGUUCGGUUACACCAAUCC   59 Target Full Sequence	1.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||||||||||||||* targets:20   GGGCUUGUUCGGUUACACCAAUCC   43 Target Full Sequence	1.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||||||||||||||* targets:1267   GGGCUUGUUCGGUUACACCAAUCC   1290 Target Full Sequence	1.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||||||||=|||||* targets:444   GGGCUUGUUCGGUUACAUCAAUCC   467 Target Full Sequence	2.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||||||||=|||||* targets:444   GGGCUUGUUCGGUUACAUCAAUCC   467 Target Full Sequence	2.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655395.2	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*||||||||*|||||||||||| targets:484   GGCCUUGUUCGUUUACACCAAUCU   507 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633684 (LOC103633684), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*|*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*|*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*|*|||||||||||||||||=* targets:12   GGGCAUGUUCGGUUACACCAAUUC   35 Target Full Sequence	2.5	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EZ064120.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*=|||||||*|||||||||||* targets:87   GGCUUUGUUCGUUUACACCAAUCC   110 Target Full Sequence	2.5	TSA: Zea mays contig65243, mRNA sequence	NA	coding protein	psRNATarget
EU948994.1	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*=|||||||*|||||||||||* targets:462   GGCUUUGUUCGUUUACACCAAUCC   485 Target Full Sequence	2.5	Zea mays clone 393087 mRNA sequence	NA	coding protein	psRNATarget
XM_008673886.2	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*=|||||||*|||||||||||* targets:2369   GGCUUUGUUCGUUUACACCAAUCC   2392 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100193045 (LOC100193045), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661803.2	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*=|||||||*|||||||||||* targets:1026   GGCUUUGUUCGUUUACACCAAUCC   1049 Target Full Sequence	2.5	PREDICTED: Zea mays protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC103639026), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672315.2	ncRNA:24   CCAGAACAAGCCAAUGUGGUUAGA   1   ||*=|||||||*|||||||||||* targets:5436   GGCUUUGUUCGUUUACACCAAUCC   5459 Target Full Sequence	2.5	PREDICTED: Zea mays formin-like protein 5 (LOC103647807), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:22   AGAACAAGCCAAUGUGGUUAGA   1   *||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:22   AGAACAAGCCAAUGUGGUUAGA   1   *||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:22   AGAACAAGCCAAUGUGGUUAGA   1   *||||||||*|||||||||||* targets:1   GCUUGUUCGUUUACACCAAUCC   22 Target Full Sequence	2.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget