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BaseInfo

ncRNA ID	novel_zma_miR8454
Species	Zea mays
Class	miRNA
Genome position	Chr9:125449201-125449327 [-]
Reference genome	RefGen_v4
Source	SRR4237220;SRR4237223;SRR4237224;SRR4237227
Length	21
Mature sequence(if miRNA)	1 - UCUUCCUCCGCAUAUAAGCCU - 21
Stem-loop(if miRNA)	--GA   C              -      G G  A      C     C      CC  C   UC     UUA AUGCGGAGGAAGAU AAAGCG U CA AGGGUU AGGAU UAGAAA  GA GAG  U     ||| |||||||||||||| |||||| | || |||||| ||||| ||||||  || |||  A     AAU UACGCCUCCUUCUA UUUUGU A GU UCCUAA UCCUA AUCUUU  CU CUU  A UCCG   A              C      - G  G      A     A      CA  U   UG
Stem-loop sequence	GAUUACAUGCGGAGGAAGAUAAAGCGGUGCAAAGGGUUCAGGAUCUAGAAACCGACGAGUCUAAGUUUCUUCACUUUCUAAAUCCUAAAUCCUGUGGAUGUUUUCAUCUUCCUCCGCAUAUAAGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008668942.2	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   =||*||||=|||||||||||| targets:2058   GGGAUUAUGUGCGGAGGAAGA   2078 Target Full Sequence	2.5	PREDICTED: Zea mays ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (si660070b03), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT019044.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   |||*|||*||||||||||||| targets:774   AGGAUUACAUGCGGAGGAAGA   794 Target Full Sequence	2.0	Zea mays clone Contig565.F mRNA sequence	NA	coding protein	psRNATarget
LQ239045.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   =||*|||*||||||||||||| targets:11   GGGAUUACAUGCGGAGGAAGA   31 Target Full Sequence	2.0	Sequence 5040 from Patent EP2985353	NA	coding protein	psRNATarget
HI406915.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   =||*|||*||||||||||||| targets:11   GGGAUUACAUGCGGAGGAAGA   31 Target Full Sequence	2.0	Sequence 5040 from Patent EP2074227	NA	coding protein	psRNATarget
JB167376.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   =||*|||*||||||||||||| targets:11   GGGAUUACAUGCGGAGGAAGA   31 Target Full Sequence	2.0	Sequence 5040 from Patent EP2559767	NA	coding protein	psRNATarget
BT061642.2	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   =||*|||*||||||||||||| targets:1695   GGGAUUACAUGCGGAGGAAGA   1715 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0168K13 mRNA, complete cds	NA	coding protein	psRNATarget
AY104666.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   **|||*||||||*|||||||| targets:259   CAGCUGAUAUGCAGAGGAAGA   279 Target Full Sequence	2.5	Zea mays PCO121749 mRNA sequence	NA	coding protein	psRNATarget
NM_001146898.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   **|||*||||||*|||||||| targets:522   CAGCUGAUAUGCAGAGGAAGA   542 Target Full Sequence	2.5	Zea mays Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (uaz275), mRNA	NA	coding protein	psRNATarget
BT038681.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   **|||*||||||*|||||||| targets:522   CAGCUGAUAUGCAGAGGAAGA   542 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0309C06 mRNA, complete cds	NA	coding protein	psRNATarget
EU945611.1	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   **|||*||||||*|||||||| targets:1001   CAGCUGAUAUGCAGAGGAAGA   1021 Target Full Sequence	2.5	Zea mays clone 279375 mRNA sequence	NA	coding protein	psRNATarget
XM_008683137.2	ncRNA:21   UCCGAAUAUACGCCUCCUUCU   1   **|||*||||||*|||||||| targets:3794   CAGCUGAUAUGCAGAGGAAGA   3814 Target Full Sequence	2.5	PREDICTED: Zea mays Cleavage and polyadenylation specificity factor (CPSF) A subunit protein (uaz275), transcript variant X1, mRNA	NA	coding protein	psRNATarget