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BaseInfo

ncRNA ID	novel_zma_miR8432
Species	Zea mays
Class	miRNA
Genome position	Chr1:297414302-297414348 [+]
Reference genome	RefGen_v4
Source	SRR3385660
Length	22
Mature sequence(if miRNA)	1 - AAGGGGAUUGAGGGGGAAAUGA - 22
Stem-loop(if miRNA)	-A                   GA   AGGGGAUUGAGGGGGAAAU  A   |||||||||||||||||||   UCCCUUAACUCCUCCUUUA  C UC                   AU
Stem-loop sequence	AAGGGGAUUGAGGGGGAAAUGAACUAAUUUCCUCCUCAAUUCCCUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973567.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |||||||||||||||||||||* targets:80   UCAUUUCCCCCUCAAUCCCCUC   101 Target Full Sequence	1.0	Zea mays clone 401029 mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |||||||||||||||||||||* targets:1793   UCAUUUCCCCCUCAAUCCCCUC   1814 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543383.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   *|=|||||||=||||||||||| targets:227   CCGUUUCCCCUUCAAUCCCCUU   248 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635833 (LOC103635833), mRNA	NA	coding protein	psRNATarget
JB170124.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:62   UGAUUUCCCCCUUAAUCCCCUU   83 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:62   UGAUUUCCCCCUUAAUCCCCUU   83 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:62   UGAUUUCCCCCUUAAUCCCCUU   83 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU942844.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   ||||||||*|||||||||=||| targets:190   UCAUUUCCACCUCAAUCCUCUU   211 Target Full Sequence	2.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:816   UGAUUUCCCCCUUAAUCCCCUU   837 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:855   UGAUUUCCCCCUUAAUCCCCUU   876 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:860   UGAUUUCCCCCUUAAUCCCCUU   881 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
BT066291.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:860   UGAUUUCCCCCUUAAUCCCCUU   881 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
AY105859.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*||||||||||=||||||||| targets:1173   UGAUUUCCCCCUUAAUCCCCUU   1194 Target Full Sequence	1.5	Zea mays PCO136287 mRNA sequence	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*|||||||||||||||||||* targets:2145   UAAUUUCCCCCUCAAUCCCCUC   2166 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001317055.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*|||||=||||||=||||||| targets:1493   UAAUUUCUCCCUCAGUCCCCUU   1514 Target Full Sequence	2.5	Zea mays Membrane metalloprotease ARASP chloroplastic (LOC100274122), mRNA	NA	coding protein	psRNATarget
BT042257.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*|||||=||||||=||||||| targets:1493   UAAUUUCUCCCUCAGUCCCCUU   1514 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181O20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543595.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*|||||=|||||||||||||* targets:1512   UAAUUUCUCCCUCAAUCCCCUC   1533 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109942132 (LOC109942132), mRNA	NA	coding protein	psRNATarget
XM_008661692.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X18, mRNA	NA	coding protein	psRNATarget
XM_008661691.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_008661689.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020544136.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_020544139.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_020544133.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020544131.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020544137.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_020544135.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020544134.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020544132.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020544126.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544125.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544130.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020544127.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544129.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |*=||||||||||||||||||* targets:2257   UAGUUUCCCCCUCAAUCCCCUC   2278 Target Full Sequence	1.0	PREDICTED: Zea mays protein transport protein sec31 (LOC103638902), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008677489.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   **|||||||||||||*|||||| targets:137   CAAUUUCCCCCUCAACCCCCUU   158 Target Full Sequence	1.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103651791), mRNA	NA	coding protein	psRNATarget
XM_008681609.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   **|||||||||||||*|||||| targets:137   CAAUUUCCCCCUCAACCCCCUU   158 Target Full Sequence	1.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103654791), mRNA	NA	coding protein	psRNATarget
XM_020551935.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   **|||||||||||||*|||||| targets:137   CAAUUUCCCCCUCAACCCCCUU   158 Target Full Sequence	1.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103654532), mRNA	NA	coding protein	psRNATarget
XM_020550668.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   **|||||||||||||*|||||| targets:137   CAAUUUCCCCCUCAACCCCCUU   158 Target Full Sequence	1.5	PREDICTED: Zea mays glutathione S-transferase T3-like (LOC103651776), mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||||=|*||||||||||||* targets:70   UUAUUUUCACCUCAAUCCCCUC   91 Target Full Sequence	3.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||||=|*||||||||||||* targets:36   UUAUUUUCACCUCAAUCCCCUC   57 Target Full Sequence	3.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
JB166488.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:83   UUAUAGCCCCCUCAAUCCCCUU   104 Target Full Sequence	2.0	Sequence 4152 from Patent EP2559767	NA	coding protein	psRNATarget
HI406027.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:83   UUAUAGCCCCCUCAAUCCCCUU   104 Target Full Sequence	2.0	Sequence 4152 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238157.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:83   UUAUAGCCCCCUCAAUCCCCUU   104 Target Full Sequence	2.0	Sequence 4152 from Patent EP2985353	NA	coding protein	psRNATarget
BT062966.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:2619   UUAUAGCCCCCUCAAUCCCCUU   2640 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0013E16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174804.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:2619   UUAUAGCCCCCUCAAUCCCCUU   2640 Target Full Sequence	2.0	Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), mRNA	NA	coding protein	psRNATarget
XM_008663899.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |=||**|||||||||||||||| targets:2707   UUAUAGCCCCCUCAAUCCCCUU   2728 Target Full Sequence	2.0	PREDICTED: Zea mays Eukaryotic translation initiation factor isoform 4G-2 (umc1280), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |||**||||||||||||||||* targets:27   UCACAUCCCCCUCAAUCCCCUC   48 Target Full Sequence	3.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
HI403493.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |||**||||||||||||||||* targets:27   UCACAUCCCCCUCAAUCCCCUC   48 Target Full Sequence	3.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   |||**||||||||||||||||* targets:27   UCACAUCCCCCUCAAUCCCCUC   48 Target Full Sequence	3.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008674590.2	ncRNA:22   AGUAAAGGGGGAGUUAGGGGAA   1   ||**||==|||||||||||||| targets:127   UCUGUUUUCCCUCAAUCCCCUU   148 Target Full Sequence	3.0	PREDICTED: Zea mays JAG (LOC100280974), transcript variant X1, mRNA	NA	coding protein	psRNATarget