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BaseInfo

ncRNA ID novel_zma_miR8421
Species Zea mays
Class miRNA
Genome position Chr2:241674384-241674488 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 1 - AGACUAAAGUGGAAUAAAAUGGUG - 24
Stem-loop(if miRNA) --   A                 AC      A C              A   
  CCA UUUAUUCCACUUUAGUC  UAAAUU U AAAUAUGGAAAUUA AAUA
  ||| |||||||||||||||||  |||||| | |||||||||||||| |||G
  GGU AAAUAAGGUGAAAUCAG  AUUUAA G UUUAUACCUUUGAU UUGA
GU   A                 AU      C U              A   
Stem-loop sequence CCAAUUUAUUCCACUUUAGUCACUAAAUUAUCAAAUAUGGAAAUUAAAAUAGAGUUAUAGUUUCCAUAUUUUGCAAUUUAUAGACUAAAGUGGAAUAAAAUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008647122.2
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*||||||||||||||||||||||
targets:2994   CUCCAUUUUAUUCCACUUUAGUCU   3017

0.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*||||||||||||||||||||||
targets:2605   CUCCAUUUUAUUCCACUUUAGUCU   2628

0.0 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*=||||||||||||=||||||||
targets:2104   CUUCAUUUUAUUCCAUUUUAGUCU   2127

1.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*=||||||||||||=||||||||
targets:2104   CUUCAUUUUAUUCCAUUUUAGUCU   2127

1.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:2156   CUCCAUUUUAUUCCAUUUUAGUCC   2179

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*||||||||||||||||||||=*
targets:487   CUCCAUUUUAUUCCACUUUAGUUC   510

2.5 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:299   CUCCAUUUUAUUCCAUUUUAGUCC   322

2.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
HI406713.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:174   CUCCAUUUUAUUCCAUUUUAGUCC   197

2.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:174   CUCCAUUUUAUUCCAUUUUAGUCC   197

2.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:174   CUCCAUUUUAUUCCAUUUUAGUCC   197

2.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:83   CUCCAUUUUAUUCCAUUUUAGUCC   106

2.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
HI406419.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:83   CUCCAUUUUAUUCCAUUUUAGUCC   106

2.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
JB166880.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||||||||||||=|||||||*
targets:83   CUCCAUUUUAUUCCAUUUUAGUCC   106

2.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
LQ235400.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1395 from Patent EP2985353 NA coding protein psRNATarget
JB163821.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1485 from Patent EP2559767 NA coding protein psRNATarget
LQ235549.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1544 from Patent EP2985353 NA coding protein psRNATarget
HI403419.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1544 from Patent EP2074227 NA coding protein psRNATarget
JB163731.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1395 from Patent EP2559767 NA coding protein psRNATarget
HI403309.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1434 from Patent EP2074227 NA coding protein psRNATarget
HI403360.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1485 from Patent EP2074227 NA coding protein psRNATarget
JB163770.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1434 from Patent EP2559767 NA coding protein psRNATarget
LQ235490.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1485 from Patent EP2985353 NA coding protein psRNATarget
JB163880.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1544 from Patent EP2559767 NA coding protein psRNATarget
HI403270.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1395 from Patent EP2074227 NA coding protein psRNATarget
LQ235439.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1434 from Patent EP2985353 NA coding protein psRNATarget
HI403265.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1390 from Patent EP2074227 NA coding protein psRNATarget
JB163726.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1390 from Patent EP2559767 NA coding protein psRNATarget
LQ235395.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1390 from Patent EP2985353 NA coding protein psRNATarget
JB163903.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1567 from Patent EP2559767 NA coding protein psRNATarget
JB163878.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1542 from Patent EP2559767 NA coding protein psRNATarget
LQ235572.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1567 from Patent EP2985353 NA coding protein psRNATarget
HI403442.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1567 from Patent EP2074227 NA coding protein psRNATarget
LQ235547.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1542 from Patent EP2985353 NA coding protein psRNATarget
HI403417.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|||||||||||||=|||||||*
targets:1   UCCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1542 from Patent EP2074227 NA coding protein psRNATarget
HI403391.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1516 from Patent EP2074227 NA coding protein psRNATarget
LQ235521.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1516 from Patent EP2985353 NA coding protein psRNATarget
JB163892.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1556 from Patent EP2559767 NA coding protein psRNATarget
LQ235501.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|=|||||||||||=|||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1496 from Patent EP2985353 NA coding protein psRNATarget
LQ235561.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1556 from Patent EP2985353 NA coding protein psRNATarget
JB163832.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|=|||||||||||=|||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1496 from Patent EP2559767 NA coding protein psRNATarget
JB163852.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1516 from Patent EP2559767 NA coding protein psRNATarget
HI403371.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *|=|||||||||||=|||||||*
targets:1   UCUAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1496 from Patent EP2074227 NA coding protein psRNATarget
HI403431.1
ncRNA:23   UGGUAAAAUAAGGUGAAAUCAGA   1
  *=||||||||||||=|||||||*
targets:1   UUCAUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1556 from Patent EP2074227 NA coding protein psRNATarget
XM_008660555.2
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |**|||||||||||||||||||=*
targets:1922   CUACAUUUUAUUCCACUUUAGUUC   1945

2.5 PREDICTED: Zea mays pentatricopeptide repeat protein PPR566-6 (LOC100381697), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552869.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||*|||||||||||||||||*
targets:1664   CUCCAAUUUAUUCCACUUUAGUCA   1687

2.0 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550132.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  |*|||*|||||||||||||||||*
targets:25   CUCCAAUUUAUUCCACUUUAGUCA   48

2.0 PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA NA coding protein psRNATarget
EU957896.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  =**|||||||||||||||||||=*
targets:1275   UUACAUUUUAUUCCACUUUAGUUA   1298

2.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
XM_020549268.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  **|||*|||||||||||||||||*
targets:1147   AUCCAAUUUAUUCCACUUUAGUCA   1170

2.0 PREDICTED: Zea mays ethylene-responsive transcription factor ERF039 (LOC100283619), mRNA NA coding protein psRNATarget
LQ235481.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1476 from Patent EP2985353 NA coding protein psRNATarget
JB163812.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1476 from Patent EP2559767 NA coding protein psRNATarget
HI403351.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1476 from Patent EP2074227 NA coding protein psRNATarget
LQ235533.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1528 from Patent EP2985353 NA coding protein psRNATarget
LQ235493.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1488 from Patent EP2985353 NA coding protein psRNATarget
LQ235578.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1573 from Patent EP2985353 NA coding protein psRNATarget
JB163824.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1488 from Patent EP2559767 NA coding protein psRNATarget
JB163864.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1528 from Patent EP2559767 NA coding protein psRNATarget
HI403403.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1528 from Patent EP2074227 NA coding protein psRNATarget
HI403363.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1488 from Patent EP2074227 NA coding protein psRNATarget
JB163909.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1573 from Patent EP2559767 NA coding protein psRNATarget
HI403448.1
ncRNA:24   GUGGUAAAAUAAGGUGAAAUCAGA   1
  ||--|||||||||||=|||||||*
targets:2   CA--AUUUUAUUCCAUUUUAGUCC   23

2.5 Sequence 1573 from Patent EP2074227 NA coding protein psRNATarget
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