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BaseInfo

ncRNA ID	novel_zma_miR8412
Species	Zea mays
Class	miRNA
Genome position	Chr7:97690518-97690644 [-]
Reference genome	RefGen_v4
Source	SRR3385660
Length	21
Mature sequence(if miRNA)	107 - GCCUGUCACAAUCUCUGGCUG - 127
Stem-loop(if miRNA)	--    -      A     -G    A  -- CC   GAAAUACCCACUAAACUUUCCACAGCAAAGG   GCCU GUCACA UCUCU  GCUG GG  A  GAG                               C   |||| |||||| |||||  |||| ||  |  |||                               G   UGGG CAGUGU AGAGA  UCGU GG  U  CUU                               C UG    U      -     GG    -  UG --   AUUUGGAAGAACAACUGUUAGUGAACUCCUC
Stem-loop sequence	GCCUGUCACAAUCUCUGGCUGAGGACCGAGGAAAUACCCACUAAACUUUCCACAGCAAAGGCGCCUCCUCAAGUGAUUGUCAACAAGAAGGUUUAUUCUGUGGUGCUGGAGAGAUGUGACUGGGUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ056060.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   ||||||||||*|||||||||| targets:353   CAGCCAGAGAAUGUGACAGGC   373 Target Full Sequence	1.5	TSA: Zea mays contig57182, mRNA sequence	NA	coding protein	psRNATarget
BT053832.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |=|||||=||||||||||*|| targets:639   CGGCCAGGGAUUGUGACAAGC   659 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0217B02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152241.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |=|||||=||||||||||*|| targets:639   CGGCCAGGGAUUGUGACAAGC   659 Target Full Sequence	2.5	Zea mays homeodomain leucine zipper family IV protein (HDZIV6_OCL6), mRNA	NA	coding protein	psRNATarget
XM_008669543.2	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |=|||||=||||||||||*|| targets:1388   CGGCCAGGGAUUGUGACAAGC   1408 Target Full Sequence	2.5	PREDICTED: Zea mays homeodomain leucine zipper family IV protein (HDZIV6_OCL6), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008669542.2	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |=|||||=||||||||||*|| targets:1388   CGGCCAGGGAUUGUGACAAGC   1408 Target Full Sequence	2.5	PREDICTED: Zea mays homeodomain leucine zipper family IV protein (HDZIV6_OCL6), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669541.2	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |=|||||=||||||||||*|| targets:1390   CGGCCAGGGAUUGUGACAAGC   1410 Target Full Sequence	2.5	PREDICTED: Zea mays homeodomain leucine zipper family IV protein (HDZIV6_OCL6), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ111027.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:78   CUGUUAGAGAUUGUGACAGGA   98 Target Full Sequence	3.0	TSA: Zea mays contig46688, mRNA sequence	NA	coding protein	psRNATarget
BT068757.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:1396   CUGUUAGAGAUUGUGACAGGA   1416 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0371G19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678946.2	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:1517   CUGUUAGAGAUUGUGACAGGA   1537 Target Full Sequence	3.0	PREDICTED: Zea mays BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (LOC100280511), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001153431.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:1643   CUGUUAGAGAUUGUGACAGGA   1663 Target Full Sequence	3.0	Zea mays BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (LOC100280511), mRNA	NA	coding protein	psRNATarget
EU952194.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:1643   CUGUUAGAGAUUGUGACAGGA   1663 Target Full Sequence	3.0	Zea mays clone 1219446 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678945.2	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:1917   CUGUUAGAGAUUGUGACAGGA   1937 Target Full Sequence	3.0	PREDICTED: Zea mays BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (LOC100280511), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551525.1	ncRNA:21   GUCGGUCUCUAACACUGUCCG   1   |*|==|||||||||||||||* targets:2602   CUGUUAGAGAUUGUGACAGGA   2622 Target Full Sequence	3.0	PREDICTED: Zea mays BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (LOC100280511), transcript variant X2, mRNA	NA	coding protein	psRNATarget