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BaseInfo

ncRNA ID novel_zma_miR8410
Species Zea mays
Class miRNA
Genome position Chr6:119096704-119096758 [-]
Reference genome RefGen_v4
Source SRR3385660
Length 24
Mature sequence(if miRNA) 32 - GAUGGUGGAUGAGUUUGAUCGUCC - 55
Stem-loop(if miRNA) --     UG       U   U    CA
  GAUGG  GAUGAGU UGA CGUC  U
  |||||  ||||||| ||| ||||  G
  CUACU  CUACUUA ACU GUAG  C
GU     GU       U   U    UU
Stem-loop sequence GAUGGUGGAUGAGUUUGAUCGUCCAUGCUUGAUGUUCAUAUUCAUCUGUCAUCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ058714.1
ncRNA:24   CCUGCUAGUUUGAGUAGGUGGUAG   1
  ||||||||||||||||||||||||
targets:103   GGACGAUCAAACUCAUCCACCAUC   126

0.0 TSA: Zea mays contig59836, mRNA sequence NA coding protein psRNATarget
BT083708.2
ncRNA:24   CCUGCUAGUUUGAGUAGGUGGUAG   1
  ||||||||||||||||||||||||
targets:76   GGACGAUCAAACUCAUCCACCAUC   99

0.0 Zea mays full-length cDNA clone ZM_BFb0030G19 mRNA, complete cds NA coding protein psRNATarget
XM_008651054.2
ncRNA:24   CCUGCUAGUUUGAGUAGGUGGUAG   1
  ||||||||||||||||||||||||
targets:1672   GGACGAUCAAACUCAUCCACCAUC   1695

0.0 PREDICTED: Zea mays E2F transcription factor-like E2FE (LOC103629955), transcript variant X2, mRNA NA coding protein psRNATarget