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BaseInfo

ncRNA ID novel_zma_miR8403
Species Zea mays
Class miRNA
Genome position Chr6:67784754-67784806 [-]
Reference genome RefGen_v4
Source SRR3385660
Length 24
Mature sequence(if miRNA) 1 - AAGCGAUCAUCUGUGGUGCAAAAU - 24
Stem-loop(if miRNA) --     G   U U          CGC
  UUUGU AUC C GGUGGUUGCU   U
  ||||| ||| | ||||||||||
  AAACG UGG G CUACUAGCGA   U
UA     -   U U          AUC
Stem-loop sequence UUUGUGAUCUCUGGUGGUUGCUCGCUUCUAAGCGAUCAUCUGUGGUGCAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ076177.1
ncRNA:24   UAAAACGUGGUGUCUACUAGCGAA   1
  *|||||||||||||||||||||||
targets:69   UUUUUGCACCACAGAUGAUCGCUU   92

0.0 TSA: Zea mays contig11814, mRNA sequence NA coding protein psRNATarget
EZ087362.1
ncRNA:24   UAAAACGUGGUGUCUACUAGCGAA   1
  |**|*||*||||||=|||||||||
targets:26   AAGUGGCUCCACAGGUGAUCGCUU   49

2.5 TSA: Zea mays contig23008, mRNA sequence NA coding protein psRNATarget
BT061894.1
ncRNA:24   UAAAACGUGGUGUCUACUAGCGAA   1
  |**|*||*||||||=|||||||||
targets:547   AAGUGGCUCCACAGGUGAUCGCUU   570

2.5 Zea mays full-length cDNA clone ZM_BFb0195D03 mRNA, complete cds NA coding protein psRNATarget
AF272754.1
ncRNA:24   UAAAACGUGGUGUCUACUAGCGAA   1
  |**|*||*||||||=|||||||||
targets:760   AAGUGGCUCCACAGGUGAUCGCUU   783

2.5 Zea mays kinesin heavy chain (KIN6) mRNA, partial cds NA coding protein psRNATarget