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BaseInfo

ncRNA ID	novel_zma_miR8400
Species	Zea mays
Class	miRNA
Genome position	Chr6:104307451-104307570 [-]
Reference genome	RefGen_v4
Source	SRR3385660
Length	21
Mature sequence(if miRNA)	100 - AAGGUACAAGUCGAUGGUGCG - 120
Stem-loop(if miRNA)	--              U  UG     A  A                    U G   A  G   AAGGUACAAGUCGA GG  CGGCU UU GAGGCAACAUUGUUUUGGAU C ACA UA A   |||||||||||||| ||  ||||| || |||||||||||||||||||| | ||| || A   UUCCAUGUUCAGCU CC  GCUGA AA CUCCGUUGUGACAGAACCUG G UGU GU G GA              C  GU     C  C                    U -   G  A
Stem-loop sequence	AAGGUACAAGUCGAUGGUGCGGCUAUUAGAGGCAACAUUGUUUUGGAUUCGACAAUAGAAGAUGGUGUGUGUCCAAGACAGUGUUGCCUCCAACAGUCGUGCCCUCGACUUGUACCUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JX469903.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:362   GCCACAAUCGACUUGUACCUC   382 Target Full Sequence	2.0	Zea mays subsp. mays clone UT3143 ARID-type transcription factor mRNA, partial cds	NA	coding protein	psRNATarget
BT069418.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:325   GCCACAAUCGACUUGUACCUC   345 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0127L12 mRNA, complete cds	NA	coding protein	psRNATarget
BT055100.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:835   GCCACAAUCGACUUGUACCUC   855 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0307I18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152860.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:835   GCCACAAUCGACUUGUACCUC   855 Target Full Sequence	2.0	Zea mays uncharacterized LOC100279908 (pco101952), mRNA	NA	coding protein	psRNATarget
XM_020540472.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:2885   GCCACAAUCGACUUGUACCUC   2905 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100279908 (pco101952), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671989.1	ncRNA:21   GCGUGGUAGCUGAACAUGGAA   1   **|||*||||||||||||||* targets:2938   GCCACAAUCGACUUGUACCUC   2958 Target Full Sequence	2.0	PREDICTED: Zea mays AT-rich interactive domain-containing protein 4 (LOC103647451), mRNA	NA	coding protein	psRNATarget