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BaseInfo

ncRNA ID novel_zma_miR8394
Species Zea mays
Class miRNA
Genome position Chr5:212841612-212841678 [+]
Reference genome RefGen_v4
Source SRR3385660
Length 22
Mature sequence(if miRNA) 46 - AGGAUGCGUUUGGUUGCGGGAC - 67
Stem-loop(if miRNA) --        A     -  C   ---UU   UU   
  CCUGCAGC CAAAC CA CCU     ACU  GCCC
  |||||||| ||||| || |||     |||  |||A
  GGGCGUUG GUUUG GU GGA     UGA  CGGU
CA        -     C  A   UUUAU   -U   
Stem-loop sequence CCUGCAGCACAAACCACCCUUUACUUUGCCCAUGGCUAGUUAUUUAGGAUGCGUUUGGUUGCGGGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT062224.1
ncRNA:22   CAGGGCGUUGGUUUGCGUAGGA   1
  |||||*||||||||||||*|||
targets:1204   GUCCCACAACCAAACGCACCCU   1225

2.5 Zea mays full-length cDNA clone ZM_BFb0229D19 mRNA, complete cds NA coding protein psRNATarget
XM_020540770.1
ncRNA:22   CAGGGCGUUGGUUUGCGUAGGA   1
  |*||||||||||||||||*|||
targets:315   GCCCCGCAACCAAACGCACCCU   336

1.5 PREDICTED: Zea mays putative disease resistance RPP13-like protein 1 (LOC109939247), mRNA NA coding protein psRNATarget