Search result

BaseInfo

ncRNA ID	novel_zma_miR8392
Species	Zea mays
Class	miRNA
Genome position	Chr5:143693103-143693152 [+]
Reference genome	RefGen_v4
Source	SRR3385660
Length	24
Mature sequence(if miRNA)	27 - UAUUUGUCAAUUUAGGAACUAAAA - 50
Stem-loop(if miRNA)	----U  C         C      CA      GU CCUAGAUUG CAAAUA  G      || ||||||||| ||||||      CA GGAUUUAAC GUUUAU  C AAAAU  A         U      AC
Stem-loop sequence	UGUCCCUAGAUUGCCAAAUACAGCCAUAUUUGUCAAUUUAGGAACUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545045.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*|||||||||*|||||| targets:2171   UUUUAGUCCCUAAAUUGCCAAAUA   2194 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   ||||||||||*||||||*|||||| targets:2059   UUUUAGUUCCAAAAUUGCCAAAUA   2082 Target Full Sequence	2.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT053999.2	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:1981   UUUUAGUAUAUAAAUUGACAAAUA   2004 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152323.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:1981   UUUUAGUAUAUAAAUUGACAAAUA   2004 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA	NA	coding protein	psRNATarget
NM_001147048.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   ||||||**=||||||||||||||| targets:1125   UUUUAGACUCUAAAUUGACAAAUA   1148 Target Full Sequence	3.0	Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA	NA	coding protein	psRNATarget
BT038994.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   ||||||**=||||||||||||||| targets:1125   UUUUAGACUCUAAAUUGACAAAUA   1148 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds	NA	coding protein	psRNATarget
BT065747.2	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:811   UUUUAGUAUAUAAAUUGACAAAUA   834 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   AAAAUCAAGGAUUUAACUGUUUAU   1   |||||||*=*|||||||||||||| targets:49   UUUUAGUAUAUAAAUUGACAAAUA   72 Target Full Sequence	3.0	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget