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BaseInfo

ncRNA ID	novel_zma_miR8389
Species	Zea mays
Class	miRNA
Genome position	Chr5:35282928-35283043 [-]
Reference genome	RefGen_v4
Source	SRR3385660
Length	23
Mature sequence(if miRNA)	1 - AUGUAGUUCCCAAACUAGCCCUA - 23
Stem-loop(if miRNA)	--               GCCAAU      -AU U     UC     A          UU   GGGCUAGUUUGGGAA      UUUUCC   G GAUUU  AUUUU CCAAGGGAAA  A   |||||||||||||||      ||||||   | |||||  ||||| ||||||||||   CCCGAUCAAACCCUU      AAAAGG   C CUAAG  UAAAA GGUUCCCUUU  G AU               -GAUGU      AUU C     GA     A          UU
Stem-loop sequence	GGGCUAGUUUGGGAAGCCAAUUUUUCCAUGUGAUUUUCAUUUUACCAAGGGAAAUUAGUUUUUCCCUUGGAAAAAUAGGAAUCCCUUAGGAAAAUGUAGUUCCCAAACUAGCCCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008659944.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   ||||||||||||||||=|||||* targets:3468   UAGGGCUAGUUUGGGAGCUACAA   3490 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008659946.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   ||||||||||||||||=|||||* targets:3477   UAGGGCUAGUUUGGGAGCUACAA   3499 Target Full Sequence	2.5	PREDICTED: Zea mays translocase of chloroplast 120, chloroplastic (LOC103637626), transcript variant X2, mRNA	NA	coding protein	psRNATarget
AY104217.1	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   |||||=|||||||||||||*||| targets:600   UAGGGUUAGUUUGGGAACUCCAU   622 Target Full Sequence	2.5	Zea mays PCO096065 mRNA sequence	NA	coding protein	psRNATarget
EU967773.1	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   |||||=|||||||||||||*||| targets:1042   UAGGGUUAGUUUGGGAACUCCAU   1064 Target Full Sequence	2.5	Zea mays clone 305961 ATP-dependent Clp protease proteolytic subunit 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT036788.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   |||||=|||||||||||||*||| targets:1482   UAGGGUUAGUUUGGGAACUCCAU   1504 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0139B06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139325.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   |||||=|||||||||||||*||| targets:1482   UAGGGUUAGUUUGGGAACUCCAU   1504 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194286 (LOC100194286), mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   *|||||||||||*|||||||||| targets:2227   GAGGGCUAGUUUAGGAACUACAU   2249 Target Full Sequence	1.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_008651210.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   *=|||||||||||||||||*||| targets:2495   AGGGGCUAGUUUGGGAACUCCAU   2517 Target Full Sequence	1.5	PREDICTED: Zea mays MAR-binding filament-like protein 1 (LOC103630123), mRNA	NA	coding protein	psRNATarget
XM_008656202.2	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   |||*|||||||||||||||*||| targets:1454   UAGAGCUAGUUUGGGAACUUCAU   1476 Target Full Sequence	1.5	PREDICTED: Zea mays probable serine/threonine-protein kinase PBL7 (LOC103634484), mRNA	NA	coding protein	psRNATarget
EU969814.1	ncRNA:23   AUCCCGAUCAAACCCUUGAUGUA   1   ***|**||||||||||||||||| targets:1226   CCAGAAUAGUUUGGGAACUACAU   1248 Target Full Sequence	2.0	Zea mays clone 336004 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget