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BaseInfo

ncRNA ID	novel_zma_miR8349
Species	Zea mays
Class	miRNA
Genome position	Chr2:131242642-131242696 [-]
Reference genome	RefGen_v4
Source	SRR3385660
Length	24
Mature sequence(if miRNA)	1 - AUAUAUGUAUGUGUGUGGGUGCCU - 24
Stem-loop(if miRNA)	--       G  -           AUUU   GCACCUG AC UAUACAUAUAU    A   ||||||| || |||||||||||   CGUGGGU UG GUAUGUAUAUA    C UC       G  U           CAUA
Stem-loop sequence	GCACCUGGACUAUACAUAUAUAUUUACAUACAUAUAUGUAUGUGUGUGGGUGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
DQ246040.1	ncRNA:24   UCC-GUGGGUGUGUGUAUGUAUAUA   1   |||-|||*||||||||||=|||||| targets:488   AGGUCACACACACACAUAUAUAUAU   512 Target Full Sequence	2.5	Zea mays clone 8663 mRNA sequence	NA	coding protein	psRNATarget
EU962030.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |*|||=*|=||||||||||||||| targets:987   AUGCAUGCGCACACAUACAUAUAU   1010 Target Full Sequence	3.0	Zea mays clone 239717 homeobox-leucine zipper protein HAT22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001320548.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |*|||=*|=||||||||||||||| targets:987   AUGCAUGCGCACACAUACAUAUAU   1010 Target Full Sequence	3.0	Zea mays Homeobox-leucine zipper protein HAT3 (LOC107275244), mRNA	NA	coding protein	psRNATarget
BT054580.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |*|||=*|=||||||||||||||| targets:970   AUGCAUGCGCACACAUACAUAUAU   993 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0164J19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008656417.2	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |**=||*||||||||||=|||||| targets:1602   AAUUACACACACACAUAUAUAUAU   1625 Target Full Sequence	2.5	PREDICTED: Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001148685.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |**=||*||||||||||=|||||| targets:1125   AAUUACACACACACAUAUAUAUAU   1148 Target Full Sequence	2.5	Zea mays UDP-glycosyltransferase 74B1 (LOC100274322), mRNA	NA	coding protein	psRNATarget
BT042772.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |**=||*||||||||||=|||||| targets:1125   AAUUACACACACACAUAUAUAUAU   1148 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038P19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547182.1	ncRNA:24   UCCGUGGGUGUGUGUAUGUAUAUA   1   |***||*||||||||||=|||||| targets:163   AACAACACACACACAUAUAUAUAU   186 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384090 (LOC100384090), mRNA	NA	coding protein	psRNATarget