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BaseInfo

ncRNA ID	novel_zma_miR8347
Species	Zea mays
Class	miRNA
Genome position	Chr2:163244661-163244703 [-]
Reference genome	RefGen_v4
Source	SRR3385660
Length	20
Mature sequence(if miRNA)	24 - CUCGCUCGCUCGCUCGCUCU - 43
Stem-loop(if miRNA)	-C    U    C      UCU   UCGC CGCU GCUCGC   U   |||| |||| ||||||   C   GGCG GCGG CGGGCG   U GC    -    U      UCA
Stem-loop sequence	CUCGCUCGCUCGCUCGCUCUUCUACUGCGGGCUGGCGGCGGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU961610.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||||||||||| targets:394   AGAGCGAGCGAGCGAGCGAG   413 Target Full Sequence	0.0	Zea mays clone 236988 protein phosphatase 2C mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137082.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||||||||||| targets:394   AGAGCGAGCGAGCGAGCGAG   413 Target Full Sequence	0.0	Zea mays protein phosphatase 2C (LOC100191653), mRNA	NA	coding protein	psRNATarget
EU950147.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:68   GGAGCGAGCGAGCGAGCGAG   87 Target Full Sequence	0.0	Zea mays clone 465464 mRNA sequence	NA	coding protein	psRNATarget
BT054082.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:67   GGAGCGAGCGAGCGAGCGAG   86 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0188K14 mRNA, complete cds	NA	coding protein	psRNATarget
AY104773.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:55   GGAGCGAGCGAGCGAGCGAG   74 Target Full Sequence	0.0	Zea mays PCO148380 mRNA sequence	NA	coding protein	psRNATarget
EU964143.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:116   GGAGCGAGCGAGCGAGCGAG   135 Target Full Sequence	0.0	Zea mays clone 276184 serine/threonine-protein kinase SAPK8 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156185.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:116   GGAGCGAGCGAGCGAGCGAG   135 Target Full Sequence	0.0	Zea mays serine/threonine-protein kinase SAPK8 (LOC100283283), mRNA	NA	coding protein	psRNATarget
XM_008679025.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:150   GGAGCGAGCGAGCGAGCGAG   169 Target Full Sequence	0.0	PREDICTED: Zea mays serine/threonine-protein kinase SAPK8 (LOC100283283), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT086222.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||||||| targets:103   GGAGCGAGCGAGCGAGCGAG   122 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0133E06 mRNA, complete cds	NA	coding protein	psRNATarget
EZ074361.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:38   CGAGCGAGCGAGCGAGCGAG   57 Target Full Sequence	0.0	TSA: Zea mays contig09998, mRNA sequence	NA	coding protein	psRNATarget
HI406785.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:92   UGAGCGAGCGAGCGAGCGAG   111 Target Full Sequence	0.0	Sequence 4910 from Patent EP2074227	NA	coding protein	psRNATarget
JB167246.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:92   UGAGCGAGCGAGCGAGCGAG   111 Target Full Sequence	0.0	Sequence 4910 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238915.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:92   UGAGCGAGCGAGCGAGCGAG   111 Target Full Sequence	0.0	Sequence 4910 from Patent EP2985353	NA	coding protein	psRNATarget
EU958873.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:83   UGAGCGAGCGAGCGAGCGAG   102 Target Full Sequence	0.0	Zea mays clone 208143 hydrophobic protein LTI6A mRNA, complete cds	NA	coding protein	psRNATarget
EU975274.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:85   UGAGCGAGCGAGCGAGCGAG   104 Target Full Sequence	0.0	Zea mays clone 486253 hydrophobic protein LTI6A mRNA, complete cds	NA	coding protein	psRNATarget
EU976584.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:13   CGAGCGAGCGAGCGAGCGAG   32 Target Full Sequence	0.0	Zea mays clone 984174 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975515.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:83   UGAGCGAGCGAGCGAGCGAG   102 Target Full Sequence	0.0	Zea mays clone 491327 mRNA sequence	NA	coding protein	psRNATarget
EU955246.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:212   UGAGCGAGCGAGCGAGCGAG   231 Target Full Sequence	0.0	Zea mays clone 1520102 hydrophobic protein LTI6A mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538545.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:109   CGAGCGAGCGAGCGAGCGAG   128 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100279052 (LOC100279052), mRNA	NA	coding protein	psRNATarget
EU969655.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:51   CGAGCGAGCGAGCGAGCGAG   70 Target Full Sequence	0.0	Zea mays clone 333619 mRNA sequence	NA	coding protein	psRNATarget
BT018599.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:46   CGAGCGAGCGAGCGAGCGAG   65 Target Full Sequence	0.0	Zea mays clone EL01N0449A02.d mRNA sequence	NA	coding protein	psRNATarget
XM_008647580.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:490   CGAGCGAGCGAGCGAGCGAG   509 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized 103627285 (LOC103627285), mRNA	NA	coding protein	psRNATarget
EU972112.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:188   CGAGCGAGCGAGCGAGCGAG   207 Target Full Sequence	0.0	Zea mays clone 375289 glycosyltransferase mRNA, complete cds	NA	coding protein	psRNATarget
BT067594.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:167   CGAGCGAGCGAGCGAGCGAG   186 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0098G14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673793.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||| targets:270   CGAGCGAGCGAGCGAGCGAG   289 Target Full Sequence	0.0	PREDICTED: Zea mays Glycosyltransferase family 61 protein (LOC100191394), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008666475.2	ncRNA:20   UCU-CGCUCGCUCGCUCGCUC   1   |||-||||||||||||||||| targets:113   AGAAGCGAGCGAGCGAGCGAG   133 Target Full Sequence	2.0	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 (LOC103643324), mRNA	NA	coding protein	psRNATarget
EZ096322.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||||=||| targets:3   UGAGCGAGCGAGCGAGUGAG   22 Target Full Sequence	1.5	TSA: Zea mays contig31976, mRNA sequence	NA	coding protein	psRNATarget
EU972799.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:12   AGCCAGCGAGCGAGCGAGCGAG   33 Target Full Sequence	2.5	Zea mays clone 388186 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975055.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:39   AGCCAGCGAGCGAGCGAGCGAG   60 Target Full Sequence	2.5	Zea mays clone 466199 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU958415.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:41   AGCCAGCGAGCGAGCGAGCGAG   62 Target Full Sequence	2.5	Zea mays clone 1689725 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952269.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:106   AGCCAGCGAGCGAGCGAGCGAG   127 Target Full Sequence	2.5	Zea mays clone 1273773 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149025.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:106   AGCCAGCGAGCGAGCGAGCGAG   127 Target Full Sequence	2.5	Zea mays NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8 mitochondrial (LOC100274725), mRNA	NA	coding protein	psRNATarget
EU969286.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|=||||||||||||||||| targets:76   CGGGCGAGCGAGCGAGCGAG   95 Target Full Sequence	1.0	Zea mays clone 328034 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU953844.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:85   AGCCAGCGAGCGAGCGAGCGAG   106 Target Full Sequence	2.5	Zea mays clone 1447544 mRNA sequence	NA	coding protein	psRNATarget
NM_001154831.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||||=||| targets:190   UGAGCGAGCGAGCGAGUGAG   209 Target Full Sequence	1.5	Zea mays pnFL-2 (LOC100281912), mRNA	NA	coding protein	psRNATarget
EU958353.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||||=||| targets:190   UGAGCGAGCGAGCGAGUGAG   209 Target Full Sequence	1.5	Zea mays clone 1686634 pnFL-2 mRNA, complete cds	NA	coding protein	psRNATarget
BT016775.1	ncRNA:20   UC--UCGCUCGCUCGCUCGCUC   1   ||--|||||||||||||||||| targets:36   AGCAAGCGAGCGAGCGAGCGAG   57 Target Full Sequence	2.5	Zea mays clone Contig608 mRNA sequence	NA	coding protein	psRNATarget
XM_008675201.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||||=||| targets:64   UGAGCGAGCGAGCGAGUGAG   83 Target Full Sequence	1.5	PREDICTED: Zea mays NAM-related protein 1 (NRP1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675202.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||||=||| targets:64   UGAGCGAGCGAGCGAGUGAG   83 Target Full Sequence	1.5	PREDICTED: Zea mays NAM-related protein 1 (NRP1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645736.2	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   |||--||||||||||||||||| targets:18   AGACAGCGAGCGAGCGAGCGAG   39 Target Full Sequence	2.5	PREDICTED: Zea mays Acetolactate synthase small subunit 1 chloroplastic (LOC100381801), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU974167.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||*|||||||| targets:64   AGAGCGAGCGAUCGAGCGAG   83 Target Full Sequence	1.5	Zea mays clone 441584 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
L19463.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:29   ACAGCGAGCGAGCGAGCGAG   48 Target Full Sequence	1.0	Zea mays Mn-superoxide dismutase (Sod3.4) mRNA, complete cds; mitochondrial gene for mitochondrial product	NA	coding protein	psRNATarget
BT041034.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:35   AGAGCGAGCGAGCGAGAGAG   54 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0168N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147837.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:35   AGAGCGAGCGAGCGAGAGAG   54 Target Full Sequence	1.5	Zea mays hypothetical protein (si603029f11(46)), mRNA	NA	coding protein	psRNATarget
DQ245409.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:25   ACAGCGAGCGAGCGAGCGAG   44 Target Full Sequence	1.0	Zea mays clone 15275 mRNA sequence	NA	coding protein	psRNATarget
BT069783.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||||*|||||| targets:778   AGAGCGAGCGAGCUAGCGAG   797 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0232N20 mRNA, complete cds	NA	coding protein	psRNATarget
EU958076.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:70   ACAGCGAGCGAGCGAGCGAG   89 Target Full Sequence	1.0	Zea mays clone 1671510 superoxide dismutase mRNA, complete cds	NA	coding protein	psRNATarget
EU970404.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||*||||||| targets:45   AGAGCGAGCGAGGGAGCGAG   64 Target Full Sequence	1.5	Zea mays clone 344574 plasma membrane associated protein mRNA, complete cds	NA	coding protein	psRNATarget
EU952706.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:201   ACAGCGAGCGAGCGAGCGAG   220 Target Full Sequence	1.0	Zea mays clone 1286840 superoxide dismutase mRNA, complete cds	NA	coding protein	psRNATarget
L19461.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:3   ACAGCGAGCGAGCGAGCGAG   22 Target Full Sequence	1.0	Zea mays Mn-superoxide dismutase (Sod3.2) mRNA, complete cds; mitochondrial gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008651771.2	ncRNA:20   UC---UCGCUCGCUCGCUCGCUC   1   ||---|||||||||||||||||| targets:331   AGUGAAGCGAGCGAGCGAGCGAG   353 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103630724), mRNA	NA	coding protein	psRNATarget
BT033764.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:61   ACAGCGAGCGAGCGAGCGAG   80 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0163D20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279464.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:1070   AGAGCGAGCGAGCGAGAGAG   1089 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276568 (LOC100276568), mRNA	NA	coding protein	psRNATarget
BT043305.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:1070   AGAGCGAGCGAGCGAGAGAG   1089 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0153A21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155305.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||*|||||||| targets:68   AGAGCGAGCGAUCGAGCGAG   87 Target Full Sequence	1.5	Zea mays zinc finger, C3HC4 type family protein (LOC100282394), mRNA	NA	coding protein	psRNATarget
EU960751.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||*|||||||| targets:68   AGAGCGAGCGAUCGAGCGAG   87 Target Full Sequence	1.5	Zea mays clone 228297 zinc finger, C3HC4 type family protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138523.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:161   ACAGCGAGCGAGCGAGCGAG   180 Target Full Sequence	1.0	Zea mays superoxide dismutase [Mn] 3.4, mitochondrial (SODA.3), mRNA	NA	coding protein	psRNATarget
BT035648.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:161   ACAGCGAGCGAGCGAGCGAG   180 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0074J02 mRNA, complete cds	NA	coding protein	psRNATarget
EU962431.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:20   AGAGCGAGCGAGCGAGAGAG   39 Target Full Sequence	1.5	Zea mays clone 242603 myb family transcription factor-related protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155730.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:20   AGAGCGAGCGAGCGAGAGAG   39 Target Full Sequence	1.5	Zea mays myb family transcription factor-related protein (LOC100282824), mRNA	NA	coding protein	psRNATarget
NM_001175562.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||*|||||||||||||||| targets:815   AGAUCGAGCGAGCGAGCGAG   834 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382868 (LOC100382868), mRNA	NA	coding protein	psRNATarget
BT065592.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||*|||||||||||||||| targets:815   AGAUCGAGCGAGCGAGCGAG   834 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0323P21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653241.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||||||||||*||| targets:276   AGAGCGAGCGAGCGAGAGAG   295 Target Full Sequence	1.5	PREDICTED: Zea mays myb family transcription factor-related protein (LOC100282824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670860.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||*||||||||||| targets:556   AGAGCGAGAGAGCGAGCGAG   575 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-7F (LOC103646141), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001323290.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||| targets:635   AUAGCGAGCGAGCGAGCGAG   654 Target Full Sequence	1.0	Zea mays multiple C2 and transmembrane domain-containing protein 2-like (LOC103646183), mRNA	NA	coding protein	psRNATarget
XM_008670864.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||*||||||||||| targets:2903   AGAGCGAGAGAGCGAGCGAG   2922 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-7F (LOC103646141), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020548209.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||*||||||||||| targets:3067   AGAGCGAGAGAGCGAGCGAG   3086 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-7F (LOC103646141), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020548208.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||*||||||||||| targets:3067   AGAGCGAGAGAGCGAGCGAG   3086 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-7F (LOC103646141), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548206.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||||||||*||||||||||| targets:3067   AGAGCGAGAGAGCGAGCGAG   3086 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-7F (LOC103646141), transcript variant X1, mRNA	NA	coding protein	psRNATarget
L19462.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||* targets:41   UGAGCGAGCGAGCGAGCGAA   60 Target Full Sequence	1.0	Zea mays Mn-superoxide dismutase (Sod3.3) mRNA, complete cds; mitochondrial gene for mitochondrial product	NA	coding protein	psRNATarget
EU961157.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||||||||||||||* targets:81   UGAGCGAGCGAGCGAGCGAA   100 Target Full Sequence	1.0	Zea mays clone 232989 leucoanthocyanidin reductase mRNA, complete cds	NA	coding protein	psRNATarget
EZ093469.1	ncRNA:19   CUCGCUCGCUCGCUCGCUC   1   |=|||||||||||||||=| targets:1   GGGCGAGCGAGCGAGCGGG   19 Target Full Sequence	2.5	TSA: Zea mays contig29119, mRNA sequence	NA	coding protein	psRNATarget
EZ074245.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|=|||=||||||||||||| targets:9   CGGGCGGGCGAGCGAGCGAG   28 Target Full Sequence	2.0	TSA: Zea mays contig09882, mRNA sequence	NA	coding protein	psRNATarget
EZ053521.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|=|||=||||||||||||| targets:3   CGGGCGGGCGAGCGAGCGAG   22 Target Full Sequence	2.0	TSA: Zea mays contig54643, mRNA sequence	NA	coding protein	psRNATarget
BT087606.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|=|||=||||||||||||| targets:24   CGGGCGGGCGAGCGAGCGAG   43 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0128A18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549492.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||||||||||||||||=* targets:160   GGAGCGAGCGAGCGAGCGGC   179 Target Full Sequence	2.5	PREDICTED: Zea mays ustilago maydis induced8 (LOC100193891), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001349873.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||||||||||||||||=* targets:151   GGAGCGAGCGAGCGAGCGGC   170 Target Full Sequence	2.5	Zea mays ustilago maydis induced8 (LOC100193891), mRNA	NA	coding protein	psRNATarget
XM_008673951.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||||||||||||||||=* targets:148   GGAGCGAGCGAGCGAGCGGC   167 Target Full Sequence	2.5	PREDICTED: Zea mays ustilago maydis induced8 (LOC100193891), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT088099.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||=|||=||||||||||| targets:53   CGAGUGAGUGAGCGAGCGAG   72 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0016F03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001352056.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||=|||=||||||||||| targets:53   CGAGUGAGUGAGCGAGCGAG   72 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191420 (LOC100191420), transcript variant 2, mRNA	NA	coding protein	psRNATarget
EU968545.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||||||||||||||*||| targets:462   GGAGCGAGCGAGCGAGAGAG   481 Target Full Sequence	1.5	Zea mays clone 322086 mRNA sequence	NA	coding protein	psRNATarget
DQ245958.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:168   AGGGCGAGCUAGCGAGCGAG   187 Target Full Sequence	2.5	Zea mays clone 93530 mRNA sequence	NA	coding protein	psRNATarget
DQ245368.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:98   AGGGCGAGCUAGCGAGCGAG   117 Target Full Sequence	2.5	Zea mays clone 14833 mRNA sequence	NA	coding protein	psRNATarget
BT039809.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:154   AGGGCGAGCUAGCGAGCGAG   173 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0046C10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156799.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:174   AGGGCGAGCUAGCGAGCGAG   193 Target Full Sequence	2.5	Zea mays ras-related protein Rab-6A (LOC100283901), mRNA	NA	coding protein	psRNATarget
EU966345.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:174   AGGGCGAGCUAGCGAGCGAG   193 Target Full Sequence	2.5	Zea mays clone 293799 ras-related protein Rab-6A mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669833.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   ||=||||||*|||||||||| targets:175   AGGGCGAGCUAGCGAGCGAG   194 Target Full Sequence	2.5	PREDICTED: Zea mays ras-related protein Rab-6A (LOC100283901), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT068105.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*||||||||||||||||=| targets:1425   AAAGCGAGCGAGCGAGCGGG   1444 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0053C19 mRNA, complete cds	NA	coding protein	psRNATarget
BT063516.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||*|||| targets:15   GGAGCGAGCGAGCGACCGAG   34 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0071M22 mRNA, complete cds	NA	coding protein	psRNATarget
BT067395.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =||||||||||||||*|||| targets:68   GGAGCGAGCGAGCGACCGAG   87 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035G13 mRNA, complete cds	NA	coding protein	psRNATarget
BT085476.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*||||||||||||||||=| targets:2123   AAAGCGAGCGAGCGAGCGGG   2142 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0017I11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654480.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*||||||||||||||||=| targets:572   AAAGCGAGCGAGCGAGCGGG   591 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103632738 (LOC103632738), mRNA	NA	coding protein	psRNATarget
AY106609.1	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:66   CGACUGCGAGCGAGCGAGCGAG   87 Target Full Sequence	2.5	Zea mays PCO140750 mRNA sequence	NA	coding protein	psRNATarget
EU968158.1	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:70   CGACUGCGAGCGAGCGAGCGAG   91 Target Full Sequence	2.5	Zea mays clone 315635 mRNA sequence	NA	coding protein	psRNATarget
BT035757.1	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:53   CGACUGCGAGCGAGCGAGCGAG   74 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0082A19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138603.1	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:53   CGACUGCGAGCGAGCGAGCGAG   74 Target Full Sequence	2.5	Zea mays GDSL esterase/lipase LTL1 (pco140750), mRNA	NA	coding protein	psRNATarget
XM_008663190.2	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:152   CGACUGCGAGCGAGCGAGCGAG   173 Target Full Sequence	2.5	PREDICTED: Zea mays GDSL esterase/lipase LTL1 (pco140750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963238.1	ncRNA:20   UCU--CGCUCGCUCGCUCGCUC   1   *||--||||||||||||||||| targets:70   CGACUGCGAGCGAGCGAGCGAG   91 Target Full Sequence	2.5	Zea mays clone 259626 anther-specific proline-rich protein APG mRNA, complete cds	NA	coding protein	psRNATarget
EZ059060.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||*|||||||||||||| targets:60   CGAGCUAGCGAGCGAGCGAG   79 Target Full Sequence	1.0	TSA: Zea mays contig60182, mRNA sequence	NA	coding protein	psRNATarget
BT068918.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||*|||||||||||||||| targets:753   CGAUCGAGCGAGCGAGCGAG   772 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0009D14 mRNA, complete cds	NA	coding protein	psRNATarget
EU941193.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *|||||||||||||*||||| targets:100   CGAGCGAGCGAGCGCGCGAG   119 Target Full Sequence	1.5	Zea mays clone 1377520 mRNA sequence	NA	coding protein	psRNATarget
BT063133.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||*|||||||||||| targets:179   UGAGCGACCGAGCGAGCGAG   198 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0029N14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681492.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||*|||||||||||||||| targets:122   UGAACGAGCGAGCGAGCGAG   141 Target Full Sequence	1.0	PREDICTED: Zea mays NEP1-interacting protein-like 1 (LOC103654657), mRNA	NA	coding protein	psRNATarget
XM_008680412.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||*|||||||||||||||| targets:144   UGAACGAGCGAGCGAGCGAG   163 Target Full Sequence	1.0	PREDICTED: Zea mays NEP1-interacting protein-like 1 (LOC103653528), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT043301.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||*|||||||||||||| targets:33   CGAGCUAGCGAGCGAGCGAG   52 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0150K11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148891.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||*|||||||||||||| targets:33   CGAGCUAGCGAGCGAGCGAG   52 Target Full Sequence	1.0	Zea mays Ras-related protein RABH1b (LOC100274535), mRNA	NA	coding protein	psRNATarget
XM_020551860.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||*|||||||||||||||| targets:147   UGAACGAGCGAGCGAGCGAG   166 Target Full Sequence	1.0	PREDICTED: Zea mays NEP1-interacting protein-like 1 (LOC103653528), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT061961.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||*|||||||||||| targets:116   UGAGCGACCGAGCGAGCGAG   135 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0201K08 mRNA, complete cds	NA	coding protein	psRNATarget
BT018424.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   *||||||*|||||||||||| targets:562   CGAGCGAACGAGCGAGCGAG   581 Target Full Sequence	1.5	Zea mays clone EL01N0361G03.d mRNA sequence	NA	coding protein	psRNATarget
NM_001177176.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||* targets:57   AAAGCGAGCGAGCGAGCGAC   76 Target Full Sequence	2.0	Zea mays Galactose oxidase/kelch repeat superfamily protein (LOC100384701), mRNA	NA	coding protein	psRNATarget
BT083991.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |*|||||||||||||||||* targets:57   AAAGCGAGCGAGCGAGCGAC   76 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0062L21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653969.2	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   |||||||||||||*|||||* targets:157   AGAGCGAGCGAGCUAGCGAU   176 Target Full Sequence	2.5	PREDICTED: Zea mays Golgin subfamily A member 4 (LOC103632124), mRNA	NA	coding protein	psRNATarget
EU953891.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|=|||*||||||||||||| targets:35   GGGGCGCGCGAGCGAGCGAG   54 Target Full Sequence	2.0	Zea mays clone 1448580 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AY111594.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|*|||||||||||||=||| targets:948   GGUGCGAGCGAGCGAGUGAG   967 Target Full Sequence	2.5	Zea mays CL12837_1 mRNA sequence	NA	coding protein	psRNATarget
BT036391.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   **|||||||||||||||||* targets:1162   CAAGCGAGCGAGCGAGCGAA   1181 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0110O22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139051.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   **|||||||||||||||||* targets:1162   CAAGCGAGCGAGCGAGCGAA   1181 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100193985), mRNA	NA	coding protein	psRNATarget
BT066849.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||*|||||||||||||=| targets:17   GGAGGGAGCGAGCGAGCGGG   36 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077H22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066422.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||*|||||||||||||=| targets:105   GGAGGGAGCGAGCGAGCGGG   124 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0123E23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174463.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||*|||||||||||||=| targets:103   GGAGGGAGCGAGCGAGCGGG   122 Target Full Sequence	2.5	Zea mays Transmembrane 9 superfamily member 12 (LOC100381648), mRNA	NA	coding protein	psRNATarget
BT061878.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   =|||*|||||||||||||=| targets:103   GGAGGGAGCGAGCGAGCGGG   122 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193F15 mRNA, complete cds	NA	coding protein	psRNATarget
BT016681.1	ncRNA:20   UCUCGCUCGCUCGCUCGCUC   1   **=|=||||||||||||||| targets:44   CUGGUGAGCGAGCGAGCGAG   63 Target Full Sequence	3.0	Zea mays clone Contig514 mRNA sequence	NA	coding protein	psRNATarget