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BaseInfo

ncRNA ID	novel_zma_miR8342
Species	Zea mays
Class	miRNA
Genome position	Chr1:229809698-229809744 [+]
Reference genome	RefGen_v4
Source	SRR3385660;SRR4237224;SRR5100248;SRR5100255
Length	22
Mature sequence(if miRNA)	1 - GAGAGGUCGAGGGAGGAGCCCA - 22
Stem-loop(if miRNA)	--      U     G      C A   GAGAGG CGAGG AGGAGC C A   |||||| ||||| |||||| | U   CUCUCC GCUCC UCUUUG G A CU      -     -      A A
Stem-loop sequence	GAGAGGUCGAGGGAGGAGCCCAAUAAGAGUUUCUCCUCGCCUCUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU960166.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |***|||||||||=|||||||| targets:65   UCACCUCCUCCCUUGACCUCUC   86 Target Full Sequence	2.5	Zea mays clone 222348 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680874.2	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |***|||||||||=|||||||| targets:281   UCACCUCCUCCCUUGACCUCUC   302 Target Full Sequence	2.5	PREDICTED: Zea mays rho guanine nucleotide exchange factor 18 (LOC100276124), mRNA	NA	coding protein	psRNATarget
EU958464.1	ncRNA:22   ACCCGAGG--AGGGAGCUGGAGAG   1   |**|||||--|||||||||||||| targets:781   UUCGCUCCGGUCCCUCGACCUCUC   804 Target Full Sequence	2.5	Zea mays clone 1693047 mRNA sequence	NA	coding protein	psRNATarget
XM_008672580.2	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   ****||=||||||||||||||| targets:2508   CACUCUUCUCCCUCGACCUCUC   2529 Target Full Sequence	2.0	PREDICTED: Zea mays LRR receptor-like serine/threonine-protein kinase FLS2 (LOC103648077), mRNA	NA	coding protein	psRNATarget
NM_001148947.3	ncRNA:22   ACCCGAGG--AGGGAGCUGGAGAG   1   |**|||||--|||||||||||||| targets:712   UUCGCUCCGGUCCCUCGACCUCUC   735 Target Full Sequence	2.5	Zea mays putative LRR receptor-like serine/threonine-protein kinase IRK (LOC100274594), mRNA	NA	coding protein	psRNATarget
BT054547.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |*|*||*||||||||||||||| targets:702   UCGACUGCUCCCUCGACCUCUC   723 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0149N09 mRNA, complete cds	NA	coding protein	psRNATarget
BT066819.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |*|*||*||||||||||||||| targets:994   UCGACUGCUCCCUCGACCUCUC   1015 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0075E06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156247.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |*|*||*||||||||||||||| targets:1028   UCGACUGCUCCCUCGACCUCUC   1049 Target Full Sequence	2.0	Zea mays cell Division Protein AAA ATPase family (LOC100283346), mRNA	NA	coding protein	psRNATarget
EU964396.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   |*|*||*||||||||||||||| targets:1028   UCGACUGCUCCCUCGACCUCUC   1049 Target Full Sequence	2.0	Zea mays clone 278548 cell Division Protein AAA ATPase family mRNA, complete cds	NA	coding protein	psRNATarget
KJ789381.1	ncRNA:22   ACCCGAGGAGGGAGCUGGAGAG   1   ****||=||||||||||||||* targets:32   ACCCCUUCUCCCUCGACCUCUG   53 Target Full Sequence	3.0	Zea mays cultivar POB21 17.7 kDa class I heat shock protein mRNA, complete cds	NA	coding protein	psRNATarget