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BaseInfo

ncRNA ID	novel_zma_miR8341
Species	Zea mays
Class	miRNA
Genome position	Chr1:225677914-225677996 [+]
Reference genome	RefGen_v4
Source	SRR3385660
Length	20
Mature sequence(if miRNA)	1 - CAUUUUUCCAAGGGAUUUCC - 20
Stem-loop(if miRNA)	--      UC  A        C     AU  A      UUA   CAUUUU  CA GGGAUUUC AUUUU  CG GGGAAA   G   ||||||  || |||||||| |||||  || ||||||   U   GUAAAA  GU CCCUAAAG UAAAA  GU CCCUUU   U AU      GU  A        A     GG  A      UAU
Stem-loop sequence	CAUUUUUCCAAGGGAUUUCCAUUUUAUCGAGGGAAAUUAGUUUAUUUUCCCAUGGGAAAAUAGAAAUCCCAUGUGAAAAUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020547541.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||||||||| targets:1949   GGAAAUCCCUUGGAAAAAUG   1968 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AF023159.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||||||||| targets:5564   GGAAAUCCCUUGGAAAAAUG   5583 Target Full Sequence	0.0	Zea mays starch synthase DULL1 (dull1) mRNA, complete cds	NA	coding protein	psRNATarget
JB163839.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1503 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235206.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1201 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235508.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1503 from Patent EP2985353	NA	coding protein	psRNATarget
JB163537.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1201 from Patent EP2559767	NA	coding protein	psRNATarget
HI403076.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1201 from Patent EP2074227	NA	coding protein	psRNATarget
HI403378.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |||||||||||||=|||||| targets:77   GGAAAUCCCUUGGGAAAAUG   96 Target Full Sequence	1.5	Sequence 1503 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008658779.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||||||||||| targets:1930   AGAAAUCCCUUGGAAAAAUG   1949 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=||||||||||||| targets:760   AGAAAUUCCUUGGAAAAAUG   779 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=||||||||||||| targets:760   AGAAAUUCCUUGGAAAAAUG   779 Target Full Sequence	1.0	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008665071.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3613   AAAAAUCCCUUGGAAAAAUG   3632 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020545579.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3630   AAAAAUCCCUUGGAAAAAUG   3649 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008665067.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3719   AAAAAUCCCUUGGAAAAAUG   3738 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008665065.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3736   AAAAAUCCCUUGGAAAAAUG   3755 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665068.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3745   AAAAAUCCCUUGGAAAAAUG   3764 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008665064.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3762   AAAAAUCCCUUGGAAAAAUG   3781 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008665066.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3791   AAAAAUCCCUUGGAAAAAUG   3810 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008665062.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3897   AAAAAUCCCUUGGAAAAAUG   3916 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665063.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **|||||||||||||||||| targets:3923   AAAAAUCCCUUGGAAAAAUG   3942 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At4g39952, mitochondrial (LOC103641737), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552563.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|=||||||||||=|||||| targets:440   AGGAAUCCCUUGGGAAAAUG   459 Target Full Sequence	2.5	PREDICTED: Zea mays probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 (LOC103653427), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |*||||=||||||||||||| targets:107   GAAAAUUCCUUGGAAAAAUG   126 Target Full Sequence	2.0	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
BT063756.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |*|||||||||||=|||||| targets:1668   GAAAAUCCCUUGGGAAAAUG   1687 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0104A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT043451.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||*|||||||| targets:754   AGAAAUCCCUUAGAAAAAUG   773 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0190D10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165454.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||*|||||||| targets:754   AGAAAUCCCUUAGAAAAAUG   773 Target Full Sequence	1.5	Zea mays 40S ribosomal protein S19 mitochondrial (LOC100303826), mRNA	NA	coding protein	psRNATarget
BT065495.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=*|||||||||||| targets:903   AGAAAUUGCUUGGAAAAAUG   922 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186L13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175527.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=*|||||||||||| targets:903   AGAAAUUGCUUGGAAAAAUG   922 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382829 (LOC100382829), mRNA	NA	coding protein	psRNATarget
XM_020549870.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=*|||||||||||| targets:950   AGAAAUUGCUUGGAAAAAUG   969 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382829 (LOC100382829), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549869.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *|||||=*|||||||||||| targets:952   AGAAAUUGCUUGGAAAAAUG   971 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382829 (LOC100382829), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166927.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |*|||||||||||||||*|| targets:80   GAAAAUCCCUUGGAAAAUUG   99 Target Full Sequence	2.5	Sequence 4591 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238596.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |*|||||||||||||||*|| targets:80   GAAAAUCCCUUGGAAAAUUG   99 Target Full Sequence	2.5	Sequence 4591 from Patent EP2985353	NA	coding protein	psRNATarget
HI406466.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   |*|||||||||||||||*|| targets:80   GAAAAUCCCUUGGAAAAUUG   99 Target Full Sequence	2.5	Sequence 4591 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001127251.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||*|||||||* targets:1324   AGAAAUCCCUUAGAAAAAUA   1343 Target Full Sequence	2.5	Zea mays WRKY DNA-binding protein (WRKY), mRNA	NA	coding protein	psRNATarget
EU518772.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||*|||||||* targets:1324   AGAAAUCCCUUAGAAAAAUA   1343 Target Full Sequence	2.5	Zea mays WRKY DNA-binding protein (WRKY) mRNA, complete cds	NA	coding protein	psRNATarget
BT035304.1	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   *||||||||||*|||||||* targets:1323   AGAAAUCCCUUAGAAAAAUA   1342 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054B07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008682835.2	ncRNA:20   CCUUUAGGGAACCUUUUUAC   1   **||||||||||*||||||| targets:968   AAAAAUCCCUUGUAAAAAUG   987 Target Full Sequence	2.5	PREDICTED: Zea mays RNA-binding KH domain-containing protein PEPPER (LOC100192689), transcript variant X1, mRNA	NA	coding protein	psRNATarget