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BaseInfo

ncRNA ID	novel_zma_miR8314
Species	Zea mays
Class	miRNA
Genome position	Chr9:155588131-155588188 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	19
Mature sequence(if miRNA)	40 - CUCUUCCUUUUCCUCUUCC - 58
Stem-loop(if miRNA)	--             U    CUAUCUCCA   CUCUUCCUUUUCC CUUC         G   ||||||||||||| ||||   GAGGAGGGAAAGG GGAG         C GC             C    AACCCUACG
Stem-loop sequence	CUCUUCCUUUUCCUCUUCCUAUCUCCAGCGCAUCCCAAGAGGCGGAAAGGGAGGAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ053625.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||||||||||| targets:15   GGAAGAGGAAAAGGAAGAG   33 Target Full Sequence	0.0	TSA: Zea mays contig54747, mRNA sequence	NA	coding protein	psRNATarget
EZ074654.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:57   GGAAGAGGAAGAGGAAGAG   75 Target Full Sequence	1.5	TSA: Zea mays contig10291, mRNA sequence	NA	coding protein	psRNATarget
EZ049857.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:96   GGAAGAGGAGAAGGAAGAG   114 Target Full Sequence	1.5	TSA: Zea mays contig50975, mRNA sequence	NA	coding protein	psRNATarget
EZ061531.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:72   GGAAGAGGAAGAGGAAGAG   90 Target Full Sequence	1.5	TSA: Zea mays contig62653, mRNA sequence	NA	coding protein	psRNATarget
EZ056730.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:163   GGAAGAGGAGAAGGAAGAG   181 Target Full Sequence	1.5	TSA: Zea mays contig57852, mRNA sequence	NA	coding protein	psRNATarget
EU949459.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:138   GGAAGAGGAAGAGGAAGAG   156 Target Full Sequence	1.5	Zea mays clone 411438 mRNA sequence	NA	coding protein	psRNATarget
EU962556.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:271   GGAAGAGGAGAAGGAAGAG   289 Target Full Sequence	1.5	Zea mays clone 243714 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ063323.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:19   GGAAGAGGAAGAGGAAGAG   37 Target Full Sequence	1.5	TSA: Zea mays contig64445, mRNA sequence	NA	coding protein	psRNATarget
EU950582.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:327   GGAAGAGGAGAAGGAAGAG   345 Target Full Sequence	1.5	Zea mays clone 500857 mRNA sequence	NA	coding protein	psRNATarget
BT016372.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:331   GGAAGAGGAGAAGGAAGAG   349 Target Full Sequence	1.5	Zea mays clone Contig205 mRNA sequence	NA	coding protein	psRNATarget
EZ110898.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:437   GGAAGAGGAAGAGGAAGAG   455 Target Full Sequence	1.5	TSA: Zea mays contig46559, mRNA sequence	NA	coding protein	psRNATarget
EU949230.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:334   GGAAGAGGAAGAGGAAGAG   352 Target Full Sequence	1.5	Zea mays clone 399527 mRNA sequence	NA	coding protein	psRNATarget
EU961087.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:390   GGAAGAGGAGAAGGAAGAG   408 Target Full Sequence	1.5	Zea mays clone 232728 60S acidic ribosomal protein P3 mRNA, complete cds	NA	coding protein	psRNATarget
EU974519.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:395   GGAAGAGGAGAAGGAAGAG   413 Target Full Sequence	1.5	Zea mays clone 451470 60S acidic ribosomal protein P3 mRNA, complete cds	NA	coding protein	psRNATarget
BT043151.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:337   GGAAGAGGAGAAGGAAGAG   355 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0110B04 mRNA, complete cds	NA	coding protein	psRNATarget
EU959386.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:386   GGAAGAGGAGAAGGAAGAG   404 Target Full Sequence	1.5	Zea mays clone 217936 mRNA sequence	NA	coding protein	psRNATarget
NM_001329682.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:386   GGAAGAGGAGAAGGAAGAG   404 Target Full Sequence	1.5	Zea mays 60S acidic ribosomal protein P3-like (LOC103629584), mRNA	NA	coding protein	psRNATarget
NM_001111919.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:390   GGAAGAGGAGAAGGAAGAG   408 Target Full Sequence	1.5	Zea mays acidic ribosomal protein P3 (arpp3), mRNA	NA	coding protein	psRNATarget
EU955156.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:377   GGAAGAGGAGAAGGAAGAG   395 Target Full Sequence	1.5	Zea mays clone 1513834 60S acidic ribosomal protein P3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153916.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:377   GGAAGAGGAGAAGGAAGAG   395 Target Full Sequence	1.5	Zea mays 60S acidic ribosomal protein P3 (LOC100280997), mRNA	NA	coding protein	psRNATarget
EU964313.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:377   GGAAGAGGAGAAGGAAGAG   395 Target Full Sequence	1.5	Zea mays clone 277898 mRNA sequence	NA	coding protein	psRNATarget
AY106007.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:389   GGAAGAGGAGAAGGAAGAG   407 Target Full Sequence	1.5	Zea mays PCO073423 mRNA sequence	NA	coding protein	psRNATarget
U62751.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:456   GGAAGAGGAGAAGGAAGAG   474 Target Full Sequence	1.5	Zea mays acidic ribosomal protein P3a (rpp3a) mRNA, complete cds	NA	coding protein	psRNATarget
EU973855.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:81   GGAAGAGGAAGAGGAAGAG   99 Target Full Sequence	1.5	Zea mays clone 422163 GTP-binding protein SAR1A mRNA, complete cds	NA	coding protein	psRNATarget
AY106333.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:151   GGAAGAGGAAGAGGAAGAG   169 Target Full Sequence	1.5	Zea mays PCO096720 mRNA sequence	NA	coding protein	psRNATarget
EU951963.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:617   GGAAGAGGAAGAGGAAGAG   635 Target Full Sequence	1.5	Zea mays clone 1063993 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU963970.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:723   GGAAGAGGAAGAGGAAGAG   741 Target Full Sequence	1.5	Zea mays clone 274693 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150396.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:725   GGAAGAGGAAGAGGAAGAG   743 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276666 (LOC100276666), mRNA	NA	coding protein	psRNATarget
EU954534.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:132   GGAAGAGGAAGAGGAAGAG   150 Target Full Sequence	1.5	Zea mays clone 1469587 GTP-binding protein SAR1A mRNA, complete cds	NA	coding protein	psRNATarget
BT017566.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:493   GGAAGAGGAAGAGGAAGAG   511 Target Full Sequence	1.5	Zea mays clone EL01N0426A11.c mRNA sequence	NA	coding protein	psRNATarget
XM_020539307.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||||||||=||||||||| targets:1201   GGAAGAGGAGAAGGAAGAG   1219 Target Full Sequence	1.5	PREDICTED: Zea mays 60S acidic ribosomal protein P3-like (LOC109939222), mRNA	NA	coding protein	psRNATarget
EU974359.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:712   GGAAGAGGAAGAGGAAGAG   730 Target Full Sequence	1.5	Zea mays clone 446997 mRNA sequence	NA	coding protein	psRNATarget
XM_008680773.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:2366   GGAAGAGGAAGAGGAAGAG   2384 Target Full Sequence	1.5	PREDICTED: Zea mays putative GTP diphosphokinase RSH2 chloroplastic (LOC103653954), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680772.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:2370   GGAAGAGGAAGAGGAAGAG   2388 Target Full Sequence	1.5	PREDICTED: Zea mays putative GTP diphosphokinase RSH2 chloroplastic (LOC103653954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008677856.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||| targets:2377   GGAAGAGGAAGAGGAAGAG   2395 Target Full Sequence	1.5	PREDICTED: Zea mays XS domain protein (LOC103652225), mRNA	NA	coding protein	psRNATarget
EZ068145.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=|||||||||||=||| targets:18   GGAGGAGGAAAAGGAGGAG   36 Target Full Sequence	2.5	TSA: Zea mays contig03780, mRNA sequence	NA	coding protein	psRNATarget
EU942494.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:397   GGAGGAGGAAGAGGAAGAG   415 Target Full Sequence	2.5	Zea mays clone 1510985 mRNA sequence	NA	coding protein	psRNATarget
BT037639.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:319   GGAGGAGGAAGAGGAAGAG   337 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0185C18 mRNA, complete cds	NA	coding protein	psRNATarget
BT038795.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:1297   GGAGGAGGAAGAGGAAGAG   1315 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0326F20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646450.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:501   GGAGGAGGAAGAGGAAGAG   519 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626068 (LOC103626068), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT084448.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:1551   GGAGGAGGAAGAGGAAGAG   1569 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115J18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008646449.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:477   GGAGGAGGAAGAGGAAGAG   495 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626068 (LOC103626068), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008669556.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:2344   GGAGGAGGAAGAGGAAGAG   2362 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 7 (LOC100279391), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054168.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:2491   GGAGGAGGAAGAGGAAGAG   2509 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0147I11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152404.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   |||=||||||=|||||||| targets:2491   GGAGGAGGAAGAGGAAGAG   2509 Target Full Sequence	2.5	Zea mays U-box domain-containing protein 7 (LOC100279391), mRNA	NA	coding protein	psRNATarget
EU948341.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:87   CGAAGAGGAAGAGGAAGAG   105 Target Full Sequence	2.5	Zea mays clone 373307 mRNA sequence	NA	coding protein	psRNATarget
EZ062228.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:31   CGAAGAGGAAGAGGAAGAG   49 Target Full Sequence	2.5	TSA: Zea mays contig63350, mRNA sequence	NA	coding protein	psRNATarget
EU950481.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *||||||||||||||=||| targets:37   AGAAGAGGAAAAGGAGGAG   55 Target Full Sequence	2.5	Zea mays clone 493917 mRNA sequence	NA	coding protein	psRNATarget
XM_008662337.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:260   UGAAGAGGAAGAGGAAGAG   278 Target Full Sequence	2.5	PREDICTED: Zea mays general transcription factor 3C polypeptide 6 (LOC103639605), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU972270.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:183   CGAAGAGGAAGAGGAAGAG   201 Target Full Sequence	2.5	Zea mays clone 378836 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020544255.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:421   UGAAGAGGAAGAGGAAGAG   439 Target Full Sequence	2.5	PREDICTED: Zea mays general transcription factor 3C polypeptide 6 (LOC103639605), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU958113.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:159   CGAAGAGGAAGAGGAAGAG   177 Target Full Sequence	2.5	Zea mays clone 1674013 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:138   CGAAGAGGAAGAGGAAGAG   156 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:138   CGAAGAGGAAGAGGAAGAG   156 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
EU950453.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:499   CGAAGAGGAAGAGGAAGAG   517 Target Full Sequence	2.5	Zea mays clone 491901 mRNA sequence	NA	coding protein	psRNATarget
BT039124.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:86   CGAAGAGGAAGAGGAAGAG   104 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0371M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001111792.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:174   CGAAGAGGAAGAGGAAGAG   192 Target Full Sequence	2.5	Zea mays uncharacterized LOC542172 (LOC542172), mRNA	NA	coding protein	psRNATarget
BT040453.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||* targets:552   GGAAGAGGAAGAGGAAGAA   570 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0095C18 mRNA, complete cds	NA	coding protein	psRNATarget
EU954325.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||* targets:530   GGAAGAGGAAGAGGAAGAA   548 Target Full Sequence	2.5	Zea mays clone 1462507 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054186.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||* targets:698   GGAAGAGGAAGAGGAAGAA   716 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0156E04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152417.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||=|||||||* targets:698   GGAAGAGGAAGAGGAAGAA   716 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279405 (LOC100279405), mRNA	NA	coding protein	psRNATarget
NM_001175068.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:822   CGAAGAGGAAGAGGAAGAG   840 Target Full Sequence	2.5	Zea mays BSD domain-containing protein (LOC100382319), mRNA	NA	coding protein	psRNATarget
BT063890.1	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   *|||||||||=|||||||| targets:822   CGAAGAGGAAGAGGAAGAG   840 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0116I10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680881.2	ncRNA:19   CCUUCUCCUUUUCCUUCUC   1   ||||||||||||||||*|| targets:2103   GGAAGAGGAAAAGGAAAAG   2121 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g16610 (LOC103654080), mRNA	NA	coding protein	psRNATarget