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BaseInfo

ncRNA ID	novel_zma_miR8305
Species	Zea mays
Class	miRNA
Genome position	Chr9:6358006-6358157 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	22
Mature sequence(if miRNA)	1 - AACCAUAUGAUCCAUUAGAUCG - 22
Stem-loop(if miRNA)	--      A             CG                C   UUUAACACUUAAACCCUUCCACC    ACUCAAUAAUCUUUAUA   AACCAU UGAUCCAUUAGAU  UGAUCCAACCGUAGGU ACA                       ACCA                 A   |||||| |||||||||||||  |||||||||||||||| |||                       ||||   UUGGUA GCUAGGUAAUCUA  GCUAGGUUGGUGUCUA UGU                       UGGU                 A GU      G             AU                -   -----------------------    ACCAAACAAUCCCCAAA
Stem-loop sequence	AACCAUAUGAUCCAUUAGAUCGUGAUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAACUCAAUAAUCUUUAUAAAAAACCCCUAACAAACCAUGGUUGUAUCUGUGGUUGGAUCGUAAUCUAAUGGAUCGGAUGGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403395.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |||||||||||||||*|||||| targets:165   CGAUCUAAUGGAUCAGAUGGUU   186 Target Full Sequence	1.5	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |||||||||||||||*|||||| targets:165   CGAUCUAAUGGAUCAGAUGGUU   186 Target Full Sequence	1.5	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
JB163856.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |||||||||||||||*|||||| targets:165   CGAUCUAAUGGAUCAGAUGGUU   186 Target Full Sequence	1.5	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |||||||||||||||*|||||| targets:966   CGAUCUAAUGGAUCAGAUGGUU   987 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |||||||||||||||*|||||| targets:966   CGAUCUAAUGGAUCAGAUGGUU   987 Target Full Sequence	1.5	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664646.2	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--|||||||||||||*|||||| targets:366   CGUAAUCUAAUGGAUCAGAUGGUU   389 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008664645.2	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--|||||||||||||*|||||| targets:366   CGUAAUCUAAUGGAUCAGAUGGUU   389 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008664644.2	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--|||||||||||||*|||||| targets:366   CGUAAUCUAAUGGAUCAGAUGGUU   389 Target Full Sequence	1.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB163559.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |*|||||||||||||*|||||| targets:141   CAAUCUAAUGGAUCAGAUGGUU   162 Target Full Sequence	1.5	Sequence 1223 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235228.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |*|||||||||||||*|||||| targets:141   CAAUCUAAUGGAUCAGAUGGUU   162 Target Full Sequence	1.5	Sequence 1223 from Patent EP2985353	NA	coding protein	psRNATarget
HI403098.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   |*|||||||||||||*|||||| targets:141   CAAUCUAAUGGAUCAGAUGGUU   162 Target Full Sequence	1.5	Sequence 1223 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   ||||*||||||||||*|||||| targets:1791   CGAUAUAAUGGAUCAGAUGGUU   1812 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163560.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||=||||||||||*|||||| targets:169   CGUAAUUUAAUGGAUCAGAUGGUU   192 Target Full Sequence	2.5	Sequence 1224 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235229.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||=||||||||||*|||||| targets:169   CGUAAUUUAAUGGAUCAGAUGGUU   192 Target Full Sequence	2.5	Sequence 1224 from Patent EP2985353	NA	coding protein	psRNATarget
HI403099.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||=||||||||||*|||||| targets:169   CGUAAUUUAAUGGAUCAGAUGGUU   192 Target Full Sequence	2.5	Sequence 1224 from Patent EP2074227	NA	coding protein	psRNATarget
JB163887.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||*||||||||||*|||||| targets:162   CGUAAUAUAAUGGAUCAGAUGGUU   185 Target Full Sequence	2.5	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
HI403426.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||*||||||||||*|||||| targets:162   CGUAAUAUAAUGGAUCAGAUGGUU   185 Target Full Sequence	2.5	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:22   GC--UAGAUUACCUAGUAUACCAA   1   ||--||*||||||||||*|||||| targets:162   CGUAAUAUAAUGGAUCAGAUGGUU   185 Target Full Sequence	2.5	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
HI403187.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   =*|||||*|||||||*|||||| targets:165   UUAUCUAUUGGAUCAGAUGGUU   186 Target Full Sequence	2.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
JB163648.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   =*|||||*|||||||*|||||| targets:165   UUAUCUAUUGGAUCAGAUGGUU   186 Target Full Sequence	2.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:22   GCUAGAUUACCUAGUAUACCAA   1   =*|||||*|||||||*|||||| targets:165   UUAUCUAUUGGAUCAGAUGGUU   186 Target Full Sequence	2.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget