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BaseInfo

ncRNA ID	novel_zma_miR8298
Species	Zea mays
Class	miRNA
Genome position	Chr1:262108084-262108128 [+]
Reference genome	RefGen_v4
Source	SRR3385651;SRR3385660
Length	23
Mature sequence(if miRNA)	23 - CACCGGACAGUGUAUGGUGCGCC - 45
Stem-loop(if miRNA)	--CA     --G                CACCG   ACUGUCCGGUGG     |||||   |||||||||||U     GUGGU   UGACAGGCCACG CCGC     AUG
Stem-loop sequence	CACACCGGACUGUCCGGUGGUGCACCGGACAGUGUAUGGUGCGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409351.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGAACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGAACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
JB169812.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGAACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
JB169499.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
HI410183.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
JB169901.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
HI409440.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:12   GGCGCACCGGACACUGUCCGGUG   34 Target Full Sequence	2.0	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:17   GGCGCACCGGACACUGUCCGGUG   39 Target Full Sequence	2.0	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
EZ107368.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:65   GGCGCACCGGACACUGUCCGGUG   87 Target Full Sequence	2.0	TSA: Zea mays contig43026, mRNA sequence	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:821   GGCGCACCGGACACUGUCCGGUG   843 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:821   GGCGCACCGGACACUGUCCGGUG   843 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:594   GGCGCACCGGACACUGUCCGGUG   616 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:594   GGCGCACCGGACACUGUCCGGUG   616 Target Full Sequence	2.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:798   GGCGCACCGGACACUGUCCGGUG   820 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:798   GGCGCACCGGACACUGUCCGGUG   820 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT066461.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:810   GGCGCACCGAACACUGUCCGGUG   832 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   |||*||||=*||||||||||||| targets:593   GGCACACCGGACACUGUCCGGUG   615 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT066461.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   |***|||||*||||||||||||| targets:832   GCACCACCAGACACUGUCCGGUG   854 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:515   GGCGCACCGGACACUGUCCGGUG   537 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:782   GGCGCACCGGACACUGUCCGGUG   804 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:782   GGCGCACCGGACACUGUCCGGUG   804 Target Full Sequence	2.0	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:645   GGCGCACCGGACACUGUCCGGUG   667 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:645   GGCGCACCGGACACUGUCCGGUG   667 Target Full Sequence	2.0	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:493   GGCGCACCGGACACUGUCCGGUG   515 Target Full Sequence	2.0	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:2853   GGCGCACCGGACACUGUCCGGUG   2875 Target Full Sequence	2.0	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU952213.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:288   GGCGCACCGGACACUGUCCGGUG   310 Target Full Sequence	2.0	Zea mays clone 1226497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||||=*||||||||||||| targets:4693   GGCGCACCGGACACUGUCCGGUG   4715 Target Full Sequence	2.0	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
HI408938.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||=|=*||||||||||||| targets:12   GGCGCAUCGGACACUGUCCGGUG   34 Target Full Sequence	3.0	Sequence 7063 from Patent EP2074227	NA	coding protein	psRNATarget
JB169399.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||=|=*||||||||||||| targets:12   GGCGCAUCGGACACUGUCCGGUG   34 Target Full Sequence	3.0	Sequence 7063 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241068.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||||||=|=*||||||||||||| targets:12   GGCGCAUCGGACACUGUCCGGUG   34 Target Full Sequence	3.0	Sequence 7063 from Patent EP2985353	NA	coding protein	psRNATarget
JB170118.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:16   GGUGCACCGGACACUGUCCGGUG   38 Target Full Sequence	2.0	Sequence 7782 from Patent EP2559767	NA	coding protein	psRNATarget
HI409657.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:16   GGUGCACCGGACACUGUCCGGUG   38 Target Full Sequence	2.0	Sequence 7782 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241787.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:16   GGUGCACCGGACACUGUCCGGUG   38 Target Full Sequence	2.0	Sequence 7782 from Patent EP2985353	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:76   GGUGCACCGGACACUGUCCGGUG   98 Target Full Sequence	2.0	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT061709.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:906   GGUGCACCGGACACUGUCCGGUG   928 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=|||||=*||||||||||||| targets:906   GGUGCACCGGACACUGUCCGGUG   928 Target Full Sequence	2.0	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
XM_020541939.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||==*||||||||||||| targets:953   GGUGCACUGGACACUGUCCGGUG   975 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541938.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||==*||||||||||||| targets:966   GGUGCACUGGACACUGUCCGGUG   988 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC100272534 (LOC100272534), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020548733.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   |||||||||*|||*||||||||| targets:2173   GGCGCACCAAACAGUGUCCGGUG   2195 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized mitochondrial protein AtMg00810-like (LOC109944105), mRNA	NA	coding protein	psRNATarget
BT054293.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   |||||||||*|||*||||||||| targets:2179   GGCGCACCAAACAGUGUCCGGUG   2201 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0218B09 mRNA, complete cds	NA	coding protein	psRNATarget
JB170155.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:32   GGUGCACCAGACAGUGUCCGGUG   54 Target Full Sequence	2.5	Sequence 7819 from Patent EP2559767	NA	coding protein	psRNATarget
HI409694.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:32   GGUGCACCAGACAGUGUCCGGUG   54 Target Full Sequence	2.5	Sequence 7819 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241824.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:32   GGUGCACCAGACAGUGUCCGGUG   54 Target Full Sequence	2.5	Sequence 7819 from Patent EP2985353	NA	coding protein	psRNATarget
HI409732.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:34   GGUGCACCAGACAGUGUCCGGUG   56 Target Full Sequence	2.5	Sequence 7857 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241862.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:34   GGUGCACCAGACAGUGUCCGGUG   56 Target Full Sequence	2.5	Sequence 7857 from Patent EP2985353	NA	coding protein	psRNATarget
JB170193.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:34   GGUGCACCAGACAGUGUCCGGUG   56 Target Full Sequence	2.5	Sequence 7857 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020542612.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   *|=|||||=*||||||||||||| targets:1156   UGUGCACCGGACACUGUCCGGUG   1178 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657658.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   *|=|||||=*||||||||||||| targets:1240   UGUGCACCGGACACUGUCCGGUG   1262 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103635109 (LOC103635109), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169569.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||*|||||=*||||||||||||| targets:99   GGAGCACCGGACACUGUCCGGUG   121 Target Full Sequence	2.0	Sequence 7233 from Patent EP2559767	NA	coding protein	psRNATarget
HI409108.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||*|||||=*||||||||||||| targets:99   GGAGCACCGGACACUGUCCGGUG   121 Target Full Sequence	2.0	Sequence 7233 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241238.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||*|||||=*||||||||||||| targets:99   GGAGCACCGGACACUGUCCGGUG   121 Target Full Sequence	2.0	Sequence 7233 from Patent EP2985353	NA	coding protein	psRNATarget
BT069074.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   |||*||||=*||||||||||||| targets:662   GGCACACCGGACACUGUCCGGUG   684 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176009.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:2188   GGUGCACCAGACAGUGUCCGGUG   2210 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383353 (LOC100383353), mRNA	NA	coding protein	psRNATarget
BT066975.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=||||||*|||*||||||||| targets:2188   GGUGCACCAGACAGUGUCCGGUG   2210 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0133B08 mRNA, complete cds	NA	coding protein	psRNATarget
HI409281.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:80   GG-GCACCGGACACUGUCCGGUG   101 Target Full Sequence	2.0	Sequence 7406 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241411.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:80   GG-GCACCGGACACUGUCCGGUG   101 Target Full Sequence	2.0	Sequence 7406 from Patent EP2985353	NA	coding protein	psRNATarget
JB169742.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:80   GG-GCACCGGACACUGUCCGGUG   101 Target Full Sequence	2.0	Sequence 7406 from Patent EP2559767	NA	coding protein	psRNATarget
EZ079086.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:34   GG-GCACCGGACACUGUCCGGUG   55 Target Full Sequence	2.0	TSA: Zea mays contig14725, mRNA sequence	NA	coding protein	psRNATarget
JB169740.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:92   GG-GCACCGGACACUGUCCGGUG   113 Target Full Sequence	2.0	Sequence 7404 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241409.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:92   GG-GCACCGGACACUGUCCGGUG   113 Target Full Sequence	2.0	Sequence 7404 from Patent EP2985353	NA	coding protein	psRNATarget
HI409279.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:92   GG-GCACCGGACACUGUCCGGUG   113 Target Full Sequence	2.0	Sequence 7404 from Patent EP2074227	NA	coding protein	psRNATarget
EZ087827.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||-|||||=*||||||||||||| targets:31   GG-GCACCGGACACUGUCCGGUG   52 Target Full Sequence	2.0	TSA: Zea mays contig23473, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ||=*||||=*||||||||||||| targets:779   GGUACACCGGACACUGUCCGGUG   801 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
U41079.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   ***|||||=*||||||||||||| targets:6   AAGGCACCGAACACUGUCCGGUG   28 Target Full Sequence	2.0	Zea mays copia-type retroelement PREM-2, partial sequence	NA	coding protein	psRNATarget
LQ241860.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   *||-|||||*|||*||||||||| targets:25   UGC-CACCAGACAGUGUCCGGUG   46 Target Full Sequence	2.5	Sequence 7855 from Patent EP2985353	NA	coding protein	psRNATarget
HI409730.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   *||-|||||*|||*||||||||| targets:25   UGC-CACCAGACAGUGUCCGGUG   46 Target Full Sequence	2.5	Sequence 7855 from Patent EP2074227	NA	coding protein	psRNATarget
JB170191.1	ncRNA:23   CCGCGUGGUAUGUGACAGGCCAC   1   *||-|||||*|||*||||||||| targets:25   UGC-CACCAGACAGUGUCCGGUG   46 Target Full Sequence	2.5	Sequence 7855 from Patent EP2559767	NA	coding protein	psRNATarget