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BaseInfo

ncRNA ID	novel_zma_miR8297
Species	Zea mays
Class	miRNA
Genome position	Chr9:18662532-18662651 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	24
Mature sequence(if miRNA)	97 - UGUUUGGUUCGUGGCUAACUGCGU - 120
Stem-loop(if miRNA)	--           -  G      GC            UUAA   UAGUCAUUUAAAUUGAAG   UGUUUGGUUCG UG CUAACU  GUUAUAUUUUAU    GGU                  A   ||||||||||| || ||||||  ||||||||||||    |||   ACAAACCAAGU AU GAUUGA  UAGUGUGAAAUG    UUG                  A GC           G  G      -A            --UA   AAAAGACGAAUUAAAAUC
Stem-loop sequence	UGUUUGGUUCGUGGCUAACUGCGUUAUAUUUUAUUUAAGGUUAGUCAUUUAAAUUGAAGAACUAAAAUUAAGCAGAAAAGUUAUGUAAAGUGUGAUAAGUUAGGUAGUGAACCAAACACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968686.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:705   GCGCAGUUAGCCACGAACCAAACA   728 Target Full Sequence	0.0	Zea mays clone 323451 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT065161.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:688   GCGCAGUUAGCCACGAACCAAACA   711 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0009L23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550436.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:723   GCGCAGUUAGCCACGAACCAAACA   746 Target Full Sequence	0.0	PREDICTED: Zea mays 14 kDa zinc-binding protein-like (LOC100277449), mRNA	NA	coding protein	psRNATarget
NM_001158867.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:827   GCGCAGUUAGCCACGAACCAAACA   850 Target Full Sequence	0.0	Zea mays pleckstrin homology domain-containing protein 1 (LOC100285978), mRNA	NA	coding protein	psRNATarget
EU974994.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:827   GCGCAGUUAGCCACGAACCAAACA   850 Target Full Sequence	0.0	Zea mays clone 462458 pleckstrin homology domain-containing protein 1 mRNA, complete cds	NA	coding protein	psRNATarget
BT088093.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:808   GCGCAGUUAGCCACGAACCAAACA   831 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0012J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU958119.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:1015   GCGCAGUUAGCCACGAACCAAACA   1038 Target Full Sequence	0.0	Zea mays clone 1674247 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149797.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||||||||||||||||| targets:1015   GCGCAGUUAGCCACGAACCAAACA   1038 Target Full Sequence	0.0	Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_020540795.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   |||=|||||||||||||||||||| targets:812   ACGUAGUUAGCCACGAACCAAACA   835 Target Full Sequence	0.0	PREDICTED: Zea mays BTB/POZ domain-containing protein NPY1 (LOC103632767), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681572.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||=|||||||||||||||||||| targets:2485   GCGUAGUUAGCCACGAACCAAACA   2508 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103654747 (LOC103654747), mRNA	NA	coding protein	psRNATarget
HI403284.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:98   GCACAGUUAGCCACGAACCAAACA   121 Target Full Sequence	0.0	Sequence 1409 from Patent EP2074227	NA	coding protein	psRNATarget
JB163745.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:98   GCACAGUUAGCCACGAACCAAACA   121 Target Full Sequence	0.0	Sequence 1409 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235414.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:98   GCACAGUUAGCCACGAACCAAACA   121 Target Full Sequence	0.0	Sequence 1409 from Patent EP2985353	NA	coding protein	psRNATarget
JB163829.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1493 from Patent EP2559767	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget
HI403368.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1493 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235498.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1493 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:101   GCACAGUUAGCCACGAACCAAACA   124 Target Full Sequence	0.0	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
JB163753.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:103   GCACAGUUAGCCACGAACCAAACA   126 Target Full Sequence	0.0	Sequence 1417 from Patent EP2559767	NA	coding protein	psRNATarget
HI403292.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:103   GCACAGUUAGCCACGAACCAAACA   126 Target Full Sequence	0.0	Sequence 1417 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235422.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||||||||||||||||||||| targets:103   GCACAGUUAGCCACGAACCAAACA   126 Target Full Sequence	0.0	Sequence 1417 from Patent EP2985353	NA	coding protein	psRNATarget
AY108857.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||||||*|||||||||||||| targets:417   GCGCAGUUAACCACGAACCAAACA   440 Target Full Sequence	1.0	Zea mays PCO060055 mRNA sequence	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*|||||||||||||||=||||| targets:3678   ACACAGUUAGCCACGAACUAAACA   3701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
BT065116.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*=|||||||||||||||||||| targets:1062   GCAUAGUUAGCCACGAACCAAACA   1085 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0044I08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663861.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*|||||||||||||||||||=| targets:2488   GCACAGUUAGCCACGAACCAAAUA   2511 Target Full Sequence	1.5	PREDICTED: Zea mays Sister chromatid cohesion 1 protein 3 (LOC100304299), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU960142.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*|||||||||||||||||| targets:1169   ACACAUUUAGCCACGAACCAAACA   1192 Target Full Sequence	1.0	Zea mays clone 222128 microtubule-associated protein RP/EB family member 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670504.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*|||||||||||||||||| targets:79   ACACAUUUAGCCACGAACCAAACA   102 Target Full Sequence	1.0	PREDICTED: Zea mays Alternative oxidase (LOC103645788), mRNA	NA	coding protein	psRNATarget
XM_020545710.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =*||||||||||||*||||||||| targets:2656   GAGCAGUUAGCCACAAACCAAACA   2679 Target Full Sequence	1.5	PREDICTED: Zea mays CRM-domain containing factor CFM3, chloroplastic/mitochondrial (LOC103642614), mRNA	NA	coding protein	psRNATarget
BT018862.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ==*||||||||||||||||||||* targets:1131   GUACAGUUAGCCACGAACCAAACU   1154 Target Full Sequence	1.0	Zea mays clone EL01N0559E06.d mRNA sequence	NA	coding protein	psRNATarget
EZ110937.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*=|*|||||||||||||||||| targets:134   ACAUAUUUAGCCACGAACCAAACA   157 Target Full Sequence	1.0	TSA: Zea mays contig46598, mRNA sequence	NA	coding protein	psRNATarget
XM_008676108.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =||||*||||||||*||||||||| targets:989   GCGCAAUUAGCCACAAACCAAACA   1012 Target Full Sequence	2.5	PREDICTED: Zea mays CASP-like protein Os12g0568700 (LOC103650532), mRNA	NA	coding protein	psRNATarget
XM_008660313.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*|||||||||||||||||| targets:792   GCACAUUUAGCCACGAACCAAACA   815 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660311.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*|||||||||||||||||| targets:792   GCACAUUUAGCCACGAACCAAACA   815 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008660309.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*|||||||||||||||||| targets:792   GCACAUUUAGCCACGAACCAAACA   815 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100280373 (LOC100280373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670840.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*|||||||||||||||||| targets:2757   GCACAUUUAGCCACGAACCAAACA   2780 Target Full Sequence	1.0	PREDICTED: Zea mays ARM repeat superfamily protein (LOC103646122), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660020.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*|||||||=|||||||||| targets:3221   ACACAUUUAGCCAUGAACCAAACA   3244 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660021.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*|||||||=|||||||||| targets:3349   ACACAUUUAGCCAUGAACCAAACA   3372 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020543539.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*|||||||=|||||||||| targets:3356   ACACAUUUAGCCAUGAACCAAACA   3379 Target Full Sequence	2.5	PREDICTED: Zea mays THO complex subunit 4B (si946052g10b), transcript variant X6, mRNA	NA	coding protein	psRNATarget
NM_001346844.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*||||||||*||||||||| targets:1579   ACACAUUUAGCCACAAACCAAACA   1602 Target Full Sequence	2.5	Zea mays protein ASPARTIC PROTEASE IN GUARD CELL 2-like (LOC103636276), mRNA	NA	coding protein	psRNATarget
XM_020543351.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   ||*||*||||||||*||||||||| targets:881   ACACAUUUAGCCACAAACCAAACA   904 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109941998 (LOC109941998), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU945170.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*||||||||*||||||||| targets:937   GCACAUUUAGCCACAAACCAAACA   960 Target Full Sequence	2.5	Zea mays clone 243250 mRNA sequence	NA	coding protein	psRNATarget
XM_008654136.2	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*||||||||*||||||||| targets:1404   GCACAUUUAGCCACAAACCAAACA   1427 Target Full Sequence	2.5	PREDICTED: Zea mays clathrin light chain 3 (LOC103632305), mRNA	NA	coding protein	psRNATarget
EU966347.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   =|*||*||||||||*||||||||| targets:1421   GCACAUUUAGCCACAAACCAAACA   1444 Target Full Sequence	2.5	Zea mays clone 293813 strictosidine synthase 1 precursor, mRNA, complete cds	NA	coding protein	psRNATarget
EU964450.1	ncRNA:24   UGCGUCAAUCGGUGCUUGGUUUGU   1   *|*||*||*||||||||||||||| targets:1045   UCACACUUUGCCACGAACCAAACA   1068 Target Full Sequence	2.0	Zea mays clone 278961 pectinesterase inhibitor domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
BT018444.1	ncRNA:24   UGCG--UCAAUCGGUGCUUGGUUUGU   1   |=||--=||*=|*||||||||||||| targets:126   AUGCUUGGUAGGGCACGAACCAAACA   151 Target Full Sequence	3.0	Zea mays clone EL01N0403C06.d mRNA sequence	NA	coding protein	psRNATarget