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BaseInfo

ncRNA ID	novel_zma_miR8289
Species	Zea mays
Class	miRNA
Genome position	Chr8:176577643-176577708 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	1 - UCCCCUUUCGUGUUGUCGCC - 20
Stem-loop(if miRNA)	-CU  UG     U       --------    GUUA    GA  GCAUG GAGGGGA        GGCU    A    ||  ||||| |||||||        ||||    A    CU  UGUGC UUCCCCU        CCGA    U CCG  GU     U       GUAGUGGU    AGUG
Stem-loop sequence	CUGAUGGCAUGUGAGGGGAGGCUGUUAAAUGUGAAGCCUGGUGAUGUCCCCUUUCGUGUUGUCGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049346.1	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   |||||||||||||||||||| targets:153   GGCGACAACACGAAAGGGGA   172 Target Full Sequence	0.0	TSA: Zea mays contig50464, mRNA sequence	NA	coding protein	psRNATarget
BT083714.2	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   |||||||||||||||||||| targets:140   GGCGACAACACGAAAGGGGA   159 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0031F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT084713.2	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   |||*||||||||||||||*| targets:140   GGCAACAACACGAAAGGGAA   159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0165F09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061065.1	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   *||*|||||||*|||||||| targets:373   UGCCACAACACCAAAGGGGA   392 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0093J07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154980.1	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   *||*|||||||*|||||||| targets:389   UGCCACAACACCAAAGGGGA   408 Target Full Sequence	2.5	Zea mays Endonuclease 2 (pco102923), mRNA	NA	coding protein	psRNATarget
EU959394.1	ncRNA:20   CCGCUGUUGUGCUUUCCCCU   1   *||*|||||||*|||||||| targets:389   UGCCACAACACCAAAGGGGA   408 Target Full Sequence	2.5	Zea mays clone 218026 nuclease PA3 mRNA, complete cds	NA	coding protein	psRNATarget