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BaseInfo

ncRNA ID	novel_zma_miR8288
Species	Zea mays
Class	miRNA
Genome position	Chr8:15549194-15549285 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	22
Mature sequence(if miRNA)	71 - GCAAUGUCUCGUUUUGACAGUA - 92
Stem-loop(if miRNA)	--          -    U        AAUCAGA  G    G       UU   CUGUUAGGAU AGAC UUGCUGAA       AC UAAU UUGCUCG  U   |||||||||| |||| ||||||||       || |||| |||||||   GACAGUUUUG UCUG AACGAUUU       UG GUUA GACGAGU  C AU          C    U        ------A  G    -       GA
Stem-loop sequence	CUGUUAGGAUAGACUUUGCUGAAAAUCAGAACGUAAUGUUGCUCGUUUCAGUGAGCAGAUUGGGUAUUUAGCAAUGUCUCGUUUUGACAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ066877.1	ncRNA:19   ACAGUUUUGCUCUGUAACG   1   *|||||||||||||||||| targets:1   GGUCAAAACGAGACAUUGC   19 Target Full Sequence	1.0	TSA: Zea mays contig02511, mRNA sequence	NA	coding protein	psRNATarget
EF519871.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1118   GUGUGUUAUAAACGAGACAUUGC   1140 Target Full Sequence	3.0	Zea mays steroid 22-alpha-hydroxylase protein (Dwf4) mRNA, complete cds	NA	coding protein	psRNATarget
EU957115.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1326   GUGUGUUAUAAACGAGACAUUGC   1348 Target Full Sequence	3.0	Zea mays clone 1583137 cytochrome P450 CYP90B14v2 mRNA, complete cds	NA	coding protein	psRNATarget
EU956946.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1329   GUGUGUUAUAAACGAGACAUUGC   1351 Target Full Sequence	3.0	Zea mays clone 1578373 cytochrome P450 CYP90B14v1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669815.2	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1334   GUGUGUUAUAAACGAGACAUUGC   1356 Target Full Sequence	3.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100191562), transcript variant X2, mRNA	NA	coding protein	psRNATarget
KY242373.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1332   GUGUGUUAUAAACGAGACAUUGC   1354 Target Full Sequence	3.0	Zea mays cytochrome P450 CYP90B14v1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669784.2	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1334   GUGUGUUAUAAACGAGACAUUGC   1356 Target Full Sequence	3.0	PREDICTED: Zea mays putative cytochrome P450 superfamily protein (LOC100191562), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001136992.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1499   GUGUGUUAUAAACGAGACAUUGC   1521 Target Full Sequence	3.0	Zea mays putative cytochrome P450 superfamily protein (LOC100191562), mRNA	NA	coding protein	psRNATarget
BT033678.1	ncRNA:22   AUGACAGU-UUUGCUCUGUAACG   1   ***|||=|-|||||||||||||| targets:1499   GUGUGUUAUAAACGAGACAUUGC   1521 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0123G11 mRNA, complete cds	NA	coding protein	psRNATarget