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BaseInfo

ncRNA ID novel_zma_miR8280
Species Zea mays
Class miRNA
Genome position Chr10:81130487-81130569 [-]
Reference genome RefGen_v4
Source SRR3385651
Length 21
Mature sequence(if miRNA) 1 - UAAGUUUCUACACAUAGUGUC - 21
Stem-loop(if miRNA) --           C    C       --UC     U    - U
  CGCUAUGUGUA AAAC UAAGAGA    CACAU GAAA C C
  ||||||||||| |||| |||||||    ||||| |||| | U
  GUGAUACACAU UUUG AUUCUCU    GUGUA CUUU G A
CU           C    A       UGAU     -    A U
Stem-loop sequence CGCUAUGUGUACAAACCUAAGAGAUCCACAUUGAAACUCUAUGAUUUCAUGUGUAGUUCUCUUAAGUUUCUACACAUAGUGUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403248.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||||||||||||||||*||
targets:8   GACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2074227 NA coding protein psRNATarget
LQ235378.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||||||||||||||||*||
targets:8   GACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2985353 NA coding protein psRNATarget
JB163709.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||||||||||||||||*||
targets:8   GACACUAUGUGUAGAAACCUA   28

1.5 Sequence 1373 from Patent EP2559767 NA coding protein psRNATarget
LQ235340.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2985353 NA coding protein psRNATarget
JB163710.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2559767 NA coding protein psRNATarget
JB163699.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2559767 NA coding protein psRNATarget
JB163671.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2559767 NA coding protein psRNATarget
LQ235324.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2985353 NA coding protein psRNATarget
HI403193.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2074227 NA coding protein psRNATarget
JB163668.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2559767 NA coding protein psRNATarget
JB163697.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2559767 NA coding protein psRNATarget
LQ235366.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2985353 NA coding protein psRNATarget
JB163655.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2559767 NA coding protein psRNATarget
LQ235368.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2985353 NA coding protein psRNATarget
LQ235337.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2985353 NA coding protein psRNATarget
HI403236.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1361 from Patent EP2074227 NA coding protein psRNATarget
LQ235375.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2985353 NA coding protein psRNATarget
JB163667.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2559767 NA coding protein psRNATarget
JB163654.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2559767 NA coding protein psRNATarget
LQ235379.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2985353 NA coding protein psRNATarget
HI403238.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1363 from Patent EP2074227 NA coding protein psRNATarget
HI403194.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1319 from Patent EP2074227 NA coding protein psRNATarget
HI403249.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1374 from Patent EP2074227 NA coding protein psRNATarget
LQ235384.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2985353 NA coding protein psRNATarget
JB163706.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2559767 NA coding protein psRNATarget
HI403245.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1370 from Patent EP2074227 NA coding protein psRNATarget
HI403207.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1332 from Patent EP2074227 NA coding protein psRNATarget
HI403206.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2074227 NA coding protein psRNATarget
LQ235323.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1318 from Patent EP2985353 NA coding protein psRNATarget
HI403254.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2074227 NA coding protein psRNATarget
HI403210.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1335 from Patent EP2074227 NA coding protein psRNATarget
JB163715.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1379 from Patent EP2559767 NA coding protein psRNATarget
LQ235336.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||=|||||||||||||*||
targets:8   GACAUUAUGUGUAGAAACCUA   28

2.5 Sequence 1331 from Patent EP2985353 NA coding protein psRNATarget
EZ062305.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *|||||||||||||||||*||
targets:62   CACACUAUGUGUAGAAACCUA   82

1.5 TSA: Zea mays contig63427, mRNA sequence NA coding protein psRNATarget
JB163683.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *=||||||||||||||||*||
targets:79   CGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2559767 NA coding protein psRNATarget
HI403222.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *=||||||||||||||||*||
targets:79   CGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2074227 NA coding protein psRNATarget
LQ235352.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *=||||||||||||||||*||
targets:79   CGCACUAUGUGUAGAAACCUA   99

1.5 Sequence 1347 from Patent EP2985353 NA coding protein psRNATarget
JB163670.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *|=|||||||||||||||*||
targets:85   CAUACUAUGUGUAGAAACCUA   105

2.5 Sequence 1334 from Patent EP2559767 NA coding protein psRNATarget
LQ235339.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *|=|||||||||||||||*||
targets:85   CAUACUAUGUGUAGAAACCUA   105

2.5 Sequence 1334 from Patent EP2985353 NA coding protein psRNATarget
HI403209.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  *|=|||||||||||||||*||
targets:85   CAUACUAUGUGUAGAAACCUA   105

2.5 Sequence 1334 from Patent EP2074227 NA coding protein psRNATarget
LQ235383.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||*|||||||||||||*||
targets:8   GACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2985353 NA coding protein psRNATarget
JB163714.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||*|||||||||||||*||
targets:8   GACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2559767 NA coding protein psRNATarget
HI403253.1
ncRNA:21   CUGUGAUACACAUCUUUGAAU   1
  ||||*|||||||||||||*||
targets:8   GACAGUAUGUGUAGAAACCUA   28

2.5 Sequence 1378 from Patent EP2074227 NA coding protein psRNATarget
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