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BaseInfo

ncRNA ID	novel_zma_miR8277
Species	Zea mays
Class	miRNA
Genome position	Chr8:149459609-149459674 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	21
Mature sequence(if miRNA)	1 - CCUCUGUUUCUUUUUAUUAGU - 21
Stem-loop(if miRNA)	--                              G   CCUCUGUUUCUUUUUAUUAGUCGCUGGAUA U   ||||||||||||||||||||||||||||||   GGAGGCAAAGAAAAAUAAUCAGCGACCUAU A AG                              C
Stem-loop sequence	CCUCUGUUUCUUUUUAUUAGUCGCUGGAUAGUACUAUCCAGCGACUAAUAAAAAGAAACGGAGGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ237954.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||||||| targets:58   ACUAAUAAAAAGAAACAGAGG   78 Target Full Sequence	0.0	Sequence 3949 from Patent EP2985353	NA	coding protein	psRNATarget
JB166285.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||||||| targets:58   ACUAAUAAAAAGAAACAGAGG   78 Target Full Sequence	0.0	Sequence 3949 from Patent EP2559767	NA	coding protein	psRNATarget
HI405824.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||||||| targets:58   ACUAAUAAAAAGAAACAGAGG   78 Target Full Sequence	0.0	Sequence 3949 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237960.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:58   ACUAAUAAAAAGAAACGGAGG   78 Target Full Sequence	1.5	Sequence 3955 from Patent EP2985353	NA	coding protein	psRNATarget
HI405830.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:58   ACUAAUAAAAAGAAACGGAGG   78 Target Full Sequence	1.5	Sequence 3955 from Patent EP2074227	NA	coding protein	psRNATarget
JB166291.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:58   ACUAAUAAAAAGAAACGGAGG   78 Target Full Sequence	1.5	Sequence 3955 from Patent EP2559767	NA	coding protein	psRNATarget
HI408623.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:67   ACUAAUAAAAAGAAACGGAGG   87 Target Full Sequence	1.5	Sequence 6748 from Patent EP2074227	NA	coding protein	psRNATarget
JB169084.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:67   ACUAAUAAAAAGAAACGGAGG   87 Target Full Sequence	1.5	Sequence 6748 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240753.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:67   ACUAAUAAAAAGAAACGGAGG   87 Target Full Sequence	1.5	Sequence 6748 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008664463.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:151   ACUAAUAAAAAGAAACGGAGG   171 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU973473.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:707   ACUAAUAAAAAGAAACGGAGG   727 Target Full Sequence	1.5	Zea mays clone 399411 mRNA sequence	NA	coding protein	psRNATarget
BT037092.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:1142   ACUAAUAAAAAGAAACGGAGG   1162 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:1142   ACUAAUAAAAAGAAACGGAGG   1162 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
EU970288.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:1381   ACUAAUAAAAAGAAACGGAGG   1401 Target Full Sequence	1.5	Zea mays clone 343094 metal tolerance protein C3 mRNA, complete cds	NA	coding protein	psRNATarget
BT024153.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:239   ACUAAUAAAAAGAAACGGAGG   259 Target Full Sequence	1.5	Zea mays clone EL01N0438E01 mRNA sequence	NA	coding protein	psRNATarget
XM_008669400.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:1658   ACUAAUAAAAAGAAACGGAGG   1678 Target Full Sequence	1.5	PREDICTED: Zea mays Pentatricopeptide repeat-containing protein PNM1 mitochondrial (LOC100274849), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675770.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:1866   ACUAAUAAAAAGAAACGGAGG   1886 Target Full Sequence	1.5	PREDICTED: Zea mays pectinesterase-like (LOC103650113), mRNA	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:2033   ACUAAUAAAAAGAAACGGAGG   2053 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:2100   ACUAAUAAAAAGAAACGGAGG   2120 Target Full Sequence	1.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664460.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:171   ACUAAUAAAAAGAAACGGAGG   191 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:3199   ACUAAUAAAAAGAAACGGAGG   3219 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||| targets:3208   ACUAAUAAAAAGAAACGGAGG   3228 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403365.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:39   ACUAAUAAAAAGAAACGGAGC   59 Target Full Sequence	2.5	Sequence 1490 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235495.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:39   ACUAAUAAAAAGAAACGGAGC   59 Target Full Sequence	2.5	Sequence 1490 from Patent EP2985353	NA	coding protein	psRNATarget
JB163826.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:39   ACUAAUAAAAAGAAACGGAGC   59 Target Full Sequence	2.5	Sequence 1490 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001328133.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:822   ACUAAUAAAAAGAAACGGAGA   842 Target Full Sequence	2.5	Zea mays Methionyl-tRNA synthetase (LOC100384454), mRNA	NA	coding protein	psRNATarget
BT070166.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:822   ACUAAUAAAAAGAAACGGAGA   842 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0141C23 mRNA, complete cds	NA	coding protein	psRNATarget
EZ061772.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   *|||||||||||||||=|||| targets:242   CCUAAUAAAAAGAAACGGAGG   262 Target Full Sequence	1.5	TSA: Zea mays contig62894, mRNA sequence	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||||||||||||||||=|||* targets:222   ACUAAUAAAAAGAAACGGAGA   242 Target Full Sequence	2.5	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI408945.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240748.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 6743 from Patent EP2985353	NA	coding protein	psRNATarget
HI408618.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 6743 from Patent EP2074227	NA	coding protein	psRNATarget
HI410015.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8140 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
JB169079.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 6743 from Patent EP2559767	NA	coding protein	psRNATarget
HI409961.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
JB169406.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242145.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8140 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
JB170422.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
JB170476.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:62   ACAAAUAAAAAGAAACGGAGG   82 Target Full Sequence	2.5	Sequence 8140 from Patent EP2559767	NA	coding protein	psRNATarget
EZ067019.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:5   ACAAAUAAAAAGAAACGGAGG   25 Target Full Sequence	2.5	TSA: Zea mays contig02653, mRNA sequence	NA	coding protein	psRNATarget
EU964901.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:555   ACAAAUAAAAAGAAACGGAGG   575 Target Full Sequence	2.5	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
EU974849.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:627   ACAAAUAAAAAGAAACGGAGG   647 Target Full Sequence	2.5	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:627   ACAAAUAAAAAGAAACGGAGG   647 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
BT060817.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:288   ACAAAUAAAAAGAAACGGAGG   308 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0054B23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1224   ACAAAUAAAAAGAAACGGAGG   1244 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1346   ACAAAUAAAAAGAAACGGAGG   1366 Target Full Sequence	2.5	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1346   ACAAAUAAAAAGAAACGGAGG   1366 Target Full Sequence	2.5	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
XM_008647346.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:199   ACAAAUAAAAAGAAACGGAGG   219 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase Os03g0188200 (LOC103626988), mRNA	NA	coding protein	psRNATarget
XM_008651544.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1413   ACAAAUAAAAAGAAACGGAGG   1433 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1330   ACAAAUAAAAAGAAACGGAGG   1350 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT043433.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1403   ACAAAUAAAAAGAAACGGAGG   1423 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0188B19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1585   ACAAAUAAAAAGAAACGGAGG   1605 Target Full Sequence	2.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1601   ACAAAUAAAAAGAAACGGAGG   1621 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
EU957018.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2058   ACAAAUAAAAAGAAACGGAGG   2078 Target Full Sequence	2.5	Zea mays clone 1580670 cytochrome P450 CYP84A33v2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008651543.2	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2554   ACAAAUAAAAAGAAACGGAGG   2574 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103630492 (LOC103630492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544250.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2493   ACAAAUAAAAAGAAACGGAGG   2513 Target Full Sequence	2.5	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase B120 (LOC103638818), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546173.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:1521   ACAAAUAAAAAGAAACGGAGG   1541 Target Full Sequence	2.5	PREDICTED: Zea mays myb-related protein P-like (LOC109943268), mRNA	NA	coding protein	psRNATarget
XM_020546615.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2854   ACAAAUAAAAAGAAACGGAGG   2874 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546614.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2871   ACAAAUAAAAAGAAACGGAGG   2891 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546612.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:2977   ACAAAUAAAAAGAAACGGAGG   2997 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546613.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   ||*|||||||||||||=|||| targets:3756   ACAAAUAAAAAGAAACGGAGG   3776 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103642456 (LOC103642456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU951438.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   =||||*||=|||||||||||| targets:301   GCUAAGAAGAAGAAACAGAGG   321 Target Full Sequence	2.5	Zea mays clone 701888 mRNA sequence	NA	coding protein	psRNATarget
BT043029.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   =||||*||=|||||||||||| targets:1369   GCUAAGAAGAAGAAACAGAGG   1389 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0084I05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148792.1	ncRNA:21   UGAUUAUUUUUCUUUGUCUCC   1   =||||*||=|||||||||||| targets:1369   GCUAAGAAGAAGAAACAGAGG   1389 Target Full Sequence	2.5	Zea mays PHD finger protein-related (LOC100274433), mRNA	NA	coding protein	psRNATarget