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BaseInfo

ncRNA ID novel_zma_miR8274
Species Zea mays
Class miRNA
Genome position Chr8:3860297-3860397 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 20
Mature sequence(if miRNA) 1 - CGUUUUGACUUUUCUAGACA - 20
Stem-loop(if miRNA) --C      A          CAGAUAAC    GG    C           
   GUUUUG CUUUUCUAGA        UUUU  UAUG AUUUAGAUAUGC
   |||||| ||||||||||        ||||  |||| |||||||||||A
   CGAAAC GAAAAGAUCU        AAAA  AUAC UAGGUCUGUAUU
UUA      C          AUAUAACA    AG    A           
Stem-loop sequence CGUUUUGACUUUUCUAGACAGAUAACUUUUGGUAUGCAUUUAGAUAUGCAUUAUGUCUGGAUACAUAGAAAAAACAAUAUAUCUAGAAAAGCCAAAGCAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020548465.1
ncRNA:20   ACA--GAUCUUUUCAGUUUUGC   1
  |||--|||||||||||||||||
targets:2488   UGUAUCUAGAAAAGUCAAAACG   2509

2.5 PREDICTED: Zea mays histone-lysine N-methyltransferase family member SUVH2 (LOC103647308), transcript variant X3, mRNA NA coding protein psRNATarget
EU943852.1
ncRNA:20   ACAGAUCUUUUCAGUUUUGC   1
  ||||||||||||*||||||*
targets:552   UGUCUAGAAAAGCCAAAACA   571

2.5 Zea mays clone 1690780 mRNA sequence NA coding protein psRNATarget
BT038959.1
ncRNA:20   ACAGAUCUUUUCAGUUUUGC   1
  ||||||||||||*||||||*
targets:785   UGUCUAGAAAAGCCAAAACA   804

2.5 Zea mays full-length cDNA clone ZM_BFb0345G19 mRNA, complete cds NA coding protein psRNATarget
BT035852.1
ncRNA:20   ACAGAUCUUUUCAGUUUUGC   1
  ||||||*|||||*|||||||
targets:926   UGUCUAAAAAAGCCAAAACG   945

2.5 Zea mays full-length cDNA clone ZM_BFb0086A12 mRNA, complete cds NA coding protein psRNATarget