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BaseInfo

ncRNA ID novel_zma_miR8271
Species Zea mays
Class miRNA
Genome position Chr2:162172640-162172754 [+]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 92 - AAUCUAUAUGGAUUGGGGUAGAAC - 115
Stem-loop(if miRNA) --    U UU                 A           U  --------A    G   GAU
  UUUA U  CAAUCCAUAUAGAUUGA GGAGAUUGAUA GG         UUGG AGG   U
  |||| |  ||||||||||||||||| ||||||||||| ||         |||| |||
  AGAU G  GUUAGGUAUAUCUAACU CCUCUAACUAU UC         GAUC UUC   U
CA    - GG                 C           C  AAAAUUAGG    G   AGU
Stem-loop sequence UUUAUUUUCAAUCCAUAUAGAUUGAAGGAGAUUGAUAUGGAUUGGGAGGGAUUUUGACUUGCUAGGGAUUAAAACUCUAUCAAUCUCCCUCAAUCUAUAUGGAUUGGGGUAGAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT055069.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:897   GUUCUACCCCAAUCCAUAUGGAUU   920

1.5 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
XM_008658561.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||||=|||||||||||||||
targets:221   GUUCUACCUCAAUCCAUAUAGAUU   244

1.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
XM_008672210.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:1683   GUUCUACCCCAAUCCAUAUGGAUU   1706

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:1910   GUUCUACCCCAAUCCAUAUGGAUU   1933

1.5 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008673290.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:1910   GUUCUACCCCAAUCCAUAUGGAUU   1933

1.5 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_008672211.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:891   GUUCUACCCCAAUCCAUAUGGAUU   914

1.5 PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666525.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:865   GUUCUACCCCAAUCCAUAUGGAUU   888

1.5 PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA NA coding protein psRNATarget
EU961636.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:1049   GUUCUACCCCAAUCCAUAUGGAUU   1072

1.5 Zea mays clone 237217 mRNA sequence NA coding protein psRNATarget
EU959345.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:793   GUUCUACCCCAAUCCAUAUGGAUU   816

1.5 Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
EU959258.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:792   GUUCUACCCCAAUCCAUAUGGAUU   815

1.5 Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product NA coding protein psRNATarget
BT062922.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:846   GUUCUACCCCAAUCCAUAUGGAUU   869

1.5 Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds NA coding protein psRNATarget
EU972046.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:704   GUUCUACCCCAAUCCAUAUGGAUU   727

1.5 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001348011.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:365   GUUCUACCCCAAUCCAUAUGGAUU   388

1.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EZ061352.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||||||||||||||||||=||||
targets:118   GUUCUACCCCAAUCCAUAUGGAUU   141

1.5 TSA: Zea mays contig62474, mRNA sequence NA coding protein psRNATarget
EU956568.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||||=||||||||||=||||
targets:1550   GUUCUACCUCAAUCCAUAUGGAUU   1573

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
EU959055.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||*|||||||||||||||=||||
targets:794   GUUYUACCCCAAUCCAUAUGGAUU   817

1.5 Zea mays clone 209821 mRNA sequence NA coding protein psRNATarget
XM_020549355.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  *||||||||||||||||||=||||
targets:859   AUUCUACCCCAAUCCAUAUGGAUU   882

1.5 PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA NA coding protein psRNATarget
HI406643.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  *||||||||||||||||||=||||
targets:18   UUUCUACCCCAAUCCAUAUGGAUU   41

1.5 Sequence 4768 from Patent EP2074227 NA coding protein psRNATarget
JB167104.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  *||||||||||||||||||=||||
targets:18   UUUCUACCCCAAUCCAUAUGGAUU   41

1.5 Sequence 4768 from Patent EP2559767 NA coding protein psRNATarget
LQ238773.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  *||||||||||||||||||=||||
targets:18   UUUCUACCCCAAUCCAUAUGGAUU   41

1.5 Sequence 4768 from Patent EP2985353 NA coding protein psRNATarget
XM_020549432.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||===|||||||||||||||
targets:1942   GUUCUAUUUCAAUCCAUAUAGAUU   1965

3.0 PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008673800.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||===|||||||||||||||
targets:1653   GUUCUAUUUCAAUCCAUAUAGAUU   1676

3.0 PREDICTED: Zea mays UDP-Glycosyltransferase superfamily protein (IDP1634), transcript variant X1, mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:24   CAAGAUGG-GGUUAGGUAUAUCUAA   1
  **||-|||-||||||||||||||||
targets:890   AAUC-ACCUCCAAUCCAUAUAGAUU   913

2.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:24   CAAGAUGG-GGUUAGGUAUAUCUAA   1
  **||-|||-||||||||||||||||
targets:890   AAUC-ACCUCCAAUCCAUAUAGAUU   913

2.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
XM_008658331.2
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  |||*|||||||||||||||=||||
targets:1618   GUUAUACCCCAAUCCAUAUGGAUU   1641

1.5 PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA NA coding protein psRNATarget
XM_020539810.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||*||||||||||||=||||
targets:630   GUUCUAACCCAAUCCAUAUGGAUU   653

2.5 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
EZ068230.1
ncRNA:24   CAAGAUGGGGUUAGGUAUAUCUAA   1
  ||||||*||||||||||||=||||
targets:40   GUUCUAGCCCAAUCCAUAUGGAUU   63

2.5 TSA: Zea mays contig03865, mRNA sequence NA coding protein psRNATarget
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