Search result

BaseInfo

ncRNA ID osa-miRf10424-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 22
Mature sequence(if miRNA) NA - UUUGGCCAGCCAGAUGGCUUGG - NA
Stem-loop(if miRNA)   AU              U           U  GG  AG
CG  UGGCUAGGCUAUUU GGCUGGCCAAA UU  CC  U
||  |||||||||||||| ||||||||||| ||  ||  G
GC  ACCGGUUCGGUAGA CCGACCGGUUU AG  GG  G
  CU              -           C  GA  AG
Stem-loop sequence CGAUUGGCUAGGCUAUUUUGGCUGGCCAAAUUUGGCCAGUGGGAGGAGGACUUUGGCCAGCCAGAUGGCUUGGCCAUCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT132250.1
ncRNA:22   GGUUCGGUAGACCGACCGGUUU   1
  ***|||*||||||=||||||||
targets:98   AACAGCAAUCUGGUUGGCCAAA   119

2.5 Oryza sativa clone RRlibC00061 mRNA sequence NA coding protein psRNATarget
CT834975.1
ncRNA:22   GGUUCGGUAGACCGACCGGUUU   1
  ***|||*||||||=||||||||
targets:281   AACAGCAAUCUGGUUGGCCAAA   302

2.5 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028F11, full insert sequence NA coding protein psRNATarget
XM_015765584.1
ncRNA:22   GGUUCGGUAGACCGACCGGUUU   1
  ***|||*||||||=||||||||
targets:2914   AACAGCAAUCUGGUUGGCCAAA   2935

2.5 PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase Nek5 (LOC4324792), transcript variant X3, mRNA serine/threonine-protein kinase Nek5(LOC4324792) coding protein psRNATarget
XM_015765583.1
ncRNA:22   GGUUCGGUAGACCGACCGGUUU   1
  ***|||*||||||=||||||||
targets:2983   AACAGCAAUCUGGUUGGCCAAA   3004

2.5 PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase Nek5 (LOC4324792), transcript variant X2, mRNA serine/threonine-protein kinase Nek5(LOC4324792) coding protein psRNATarget
XM_015765582.1
ncRNA:22   GGUUCGGUAGACCGACCGGUUU   1
  ***|||*||||||=||||||||
targets:3199   AACAGCAAUCUGGUUGGCCAAA   3220

2.5 PREDICTED: Oryza sativa Japonica Group serine/threonine-protein kinase Nek5 (LOC4324792), transcript variant X1, mRNA serine/threonine-protein kinase Nek5(LOC4324792) coding protein psRNATarget