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BaseInfo

ncRNA ID	novel_zma_miR8264
Species	Zea mays
Class	miRNA
Genome position	Chr8:93238929-93239018 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	1 - CCUUUUUGUGAGAGGCUGCA - 20
Stem-loop(if miRNA)	--     C             AG     CA     --   UU  GU   CAGUC CUCAUAAAAAGGA  AUAGA  UCACU  UAG  GU  U   ||||| |||||||||||||  |||||  |||||  |||  ||   GUCGG GAGUGUUUUUCCU  UAUCU  AGUGG  GUC  CG  A AC     A             CU     AA     GC   UU  UU
Stem-loop sequence	CAGUCCCUCAUAAAAAGGAAGAUAGACAUCACUUAGUUGUGUUAUUGCUUCUGCGGGUGAAAUCUAUUCUCCUUUUUGUGAGAGGCUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968721.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||||||||||||=||||||* targets:934   UGCAGCCUCUCAUAAAAAGU   953 Target Full Sequence	2.5	Zea mays clone 323697 tyrosine specific protein phosphatase family protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ235188.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||||||||||||||||||** targets:15   UGCAGCCUCUCACAAAAAUA   34 Target Full Sequence	2.5	Sequence 1183 from Patent EP2985353	NA	coding protein	psRNATarget
JB163519.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||||||||||||||||||** targets:15   UGCAGCCUCUCACAAAAAUA   34 Target Full Sequence	2.5	Sequence 1183 from Patent EP2559767	NA	coding protein	psRNATarget
HI403058.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||||||||||||||||||** targets:15   UGCAGCCUCUCACAAAAAUA   34 Target Full Sequence	2.5	Sequence 1183 from Patent EP2074227	NA	coding protein	psRNATarget
X55314.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   |||||||*|||||||||||| targets:918   UGCAGCCCCUCACAAAAAGG   937 Target Full Sequence	1.5	Zea mays A2 gene	NA	coding protein	psRNATarget
XM_008679788.2	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   |||||=|*|||||||||||| targets:484   UGCAGUCCCUCACAAAAAGG   503 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103652812 (LOC103652812), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060779.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||*||*=||||||||||||| targets:578   UGGAGAUUCUCACAAAAAGG   597 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0049A12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669659.2	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||*||*=||||||||||||| targets:636   UGGAGAUUCUCACAAAAAGG   655 Target Full Sequence	3.0	PREDICTED: Zea mays CDT1a protein (LOC100280492), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001153412.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||*||*=||||||||||||| targets:572   UGGAGAUUCUCACAAAAAGG   591 Target Full Sequence	3.0	Zea mays CDT1a protein (LOC100280492), mRNA	NA	coding protein	psRNATarget
EU952070.1	ncRNA:20   ACGUCGGAGAGUGUUUUUCC   1   ||*||*=||||||||||||| targets:572   UGGAGAUUCUCACAAAAAGG   591 Target Full Sequence	3.0	Zea mays clone 1156281 CDT1a protein mRNA, complete cds	NA	coding protein	psRNATarget