Search result

BaseInfo

ncRNA ID	novel_zma_miR8219
Species	Zea mays
Class	miRNA
Genome position	Chr6:151396343-151396391 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	23
Mature sequence(if miRNA)	27 - AUGUGUUCAUGACAUGUGGGUCC - 49
Stem-loop(if miRNA)	--       CA        G       AUGUGUU  UGACAUGU GGUCC   |||||||  |||||||| ||||A   UACACAG  ACUGUACA CUAGU UU       UG        A
Stem-loop sequence	AUGUGUUCAUGACAUGUGGGUCCAUGAUCAACAUGUCAGUGACACAUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544904.1	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   *|||||||||||||||*|||||| targets:66   AGACCCACAUGUCAUGCACACAU   88 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   *|||||||||||||||*|||||| targets:62   AGACCCACAUGUCAUGCACACAU   84 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   *|||||||||||||||*|||||| targets:53   AGACCCACAUGUCAUGCACACAU   75 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU953699.1	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   ***==|||||||||*|||||||| targets:604   UCUUUCACAUGUCAAGAACACAU   626 Target Full Sequence	2.5	Zea mays clone 1444444 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666553.2	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   ***==|||||||||*|||||||| targets:1032   UCUUUCACAUGUCAAGAACACAU   1054 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100274947), mRNA	NA	coding protein	psRNATarget
BT070201.2	ncRNA:23   CCUGGGUGUACAGUACUUGUGUA   1   **=|*||=||||||||||||||* targets:31   CAGCACAUAUGUCAUGAACACAA   53 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0190G12 mRNA, complete cds	NA	coding protein	psRNATarget