Search result

BaseInfo

ncRNA ID novel_zma_miR8216
Species Zea mays
Class miRNA
Genome position Chr6:172425936-172425996 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 20
Mature sequence(if miRNA) 1 - AGAAGAUAGAAGUACCUGGA - 20
Stem-loop(if miRNA) --       A    -  C    AAGU   UG
  AGAAGAU GAAG UA CUGG    UUC  U
  ||||||| |||| || ||||    |||  C
  UCUUCUA CUUC GU GACC    GAG  G
CU       -    C  A    AUGU   UA
Stem-loop sequence AGAAGAUAGAAGUACCUGGAAGUUUCUGUCGAUGAGUGUACCAGAUGCCUUCAUCUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU976015.1
ncRNA:20   AGGUCCAUGAAGAUAGAAGA   1
  |=||||||||||||*|||||
targets:291   UUCAGGUACUUCUAACUUCU   310

2.5 Zea mays clone 508722 mRNA sequence NA coding protein psRNATarget
BT060981.1
ncRNA:20   AGGUCCAUGAAGAUAGAAGA   1
  *|=||*||||||||||||||
targets:1115   CCUAGAUACUUCUAUCUUCU   1134

2.0 Zea mays full-length cDNA clone ZM_BFb0080K12 mRNA, complete cds NA coding protein psRNATarget
NM_001165810.1
ncRNA:20   AGGUCCAUGAAGAUAGAAGA   1
  *|=||*||||||||||||||
targets:1115   CCUAGAUACUUCUAUCUUCU   1134

2.0 Zea mays Anaphase-promoting complex subunit 4 (LOC100304372), mRNA NA coding protein psRNATarget