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BaseInfo

ncRNA ID novel_zma_miR8211
Species Zea mays
Class miRNA
Genome position Chr6:100876428-100876479 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 20
Mature sequence(if miRNA) 1 - GUUGCUGGUCUGCGAAUUCG - 20
Stem-loop(if miRNA) --              AA    GAAA
  GUUGCUGGUCUGCG  UUCG    U
  ||||||||||||||  ||||
  CAAUGAUCGGAUGC  AAGU    A
UA              GG    AGUA
Stem-loop sequence GUUGCUGGUCUGCGAAUUCGGAAAUAAUGAUGAAGGCGUAGGCUAGUAACAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ103505.1
ncRNA:20   GCUUAAGCGUCUGGUCGUUG   1
  |||||||||=||||||||||
targets:43   CGAAUUCGCGGACCAGCAAC   62

1.5 TSA: Zea mays contig39162, mRNA sequence NA coding protein psRNATarget
EU970237.1
ncRNA:20   GCUUAAGCGUCUGGUCGUUG   1
  =||*|||||||||||||||*
targets:497   UGAUUUCGCAGACCAGCAAA   516

2.0 Zea mays clone 342523 mRNA sequence NA coding protein psRNATarget
EU964524.1
ncRNA:20   GCUUAAGCGUCUGGUCGUUG   1
  =||*|||||||||||||||*
targets:635   UGAUUUCGCAGACCAGCAAA   654

2.0 Zea mays clone 279542 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU974441.1
ncRNA:20   GCUUAAGCGUCUGGUCGUUG   1
  **||||*|||||||||||||
targets:249   GUAAUUAGCAGACCAGCAAC   268

2.0 Zea mays clone 449480 mRNA sequence NA coding protein psRNATarget