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BaseInfo

ncRNA ID novel_zma_miR8198
Species Zea mays
Class miRNA
Genome position Chr5:150372044-150372130 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 20
Mature sequence(if miRNA) 68 - UGCCAAAGGAGAGUUGCCCU - 87
Stem-loop(if miRNA) --U           C      GAG    CGACU    -   AC   C
   GCGGCUCUCCU UGGCAU   GGCG     GAGA GGC  GAA A
   ||||||||||| ||||||   ||||     |||| |||  |||
   CGUUGAGAGGA ACCGUA   CCGU     CUCU CCG  CUU G
UCC           A      --A    ----C    U   GU   U
Stem-loop sequence UGCGGCUCUCCUCUGGCAUGAGGGCGCGACUGAGAGGCACGAACAGUUUCUGGCCUUCUCCUGCCAAUGCCAAAGGAGAGUUGCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403440.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1565 from Patent EP2074227 NA coding protein psRNATarget
HI403132.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1257 from Patent EP2074227 NA coding protein psRNATarget
LQ235262.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1257 from Patent EP2985353 NA coding protein psRNATarget
LQ235570.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1565 from Patent EP2985353 NA coding protein psRNATarget
JB163901.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1565 from Patent EP2559767 NA coding protein psRNATarget
JB163593.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||||||||||||||||
targets:12   AGGGCAACUCUCCUUUGGCA   31

0.0 Sequence 1257 from Patent EP2559767 NA coding protein psRNATarget
EU949059.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  ||||||=|||||||||||||
targets:72   AGGGCAGCUCUCCUUUGGCA   91

1.0 Zea mays clone 394906 mRNA sequence NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  |||||||*||||||||||||
targets:256   AGGGCAAAUCUCCUUUGGCA   275

1.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *|||=||=||||||||||||
targets:653   UGGGUAAUUCUCCUUUGGCA   672

2.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  =||||||*||||||||||||
targets:475   GGGGCAAAUCUCCUUUGGCA   494

1.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:433   UGGGCAAAUCUCCUUUGGCA   452

1.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:515   UGGGCAAAUCUCCUUUGGCA   534

1.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
KT345709.1
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:566   CGGGCAAAUCUCCUUUGGCA   585

1.5 Zea mays putative PHO2 mRNA, complete cds NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  |||||||*||||||||||||
targets:1160   AGGGCAAAUCUCCUUUGGCA   1179

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *|||=||=||||||||||||
targets:1557   UGGGUAAUUCUCCUUUGGCA   1576

2.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  =||||||*||||||||||||
targets:1379   GGGGCAAAUCUCCUUUGGCA   1398

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:1337   UGGGCAAAUCUCCUUUGGCA   1356

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:1419   UGGGCAAAUCUCCUUUGGCA   1438

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650020.2
ncRNA:20   UCCCGUUGAGAGGAAACCGU   1
  *||||||*||||||||||||
targets:1470   CGGGCAAAUCUCCUUUGGCA   1489

1.5 PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA NA coding protein psRNATarget
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