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BaseInfo

ncRNA ID	novel_zma_miR8196
Species	Zea mays
Class	miRNA
Genome position	Chr5:2846330-2846517 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	169 - CGCUAUCUAUCCUGAGCUCC - 188
Stem-loop(if miRNA)	--         G         CUA   ------A    C C      U      AC  A  -   --A       U A                        AGCUCAGGA GGAUAGCGC   GGA       AUCA A AUAGAU GGAGCC  GA GA GGA   GGGAGAA G GAGAGAGAGAGACAGAGCAGCU   ||||||||| |||||||||   |||       |||| | |||||| ||||||  || || |||   ||||||| | |||||||||||||||||||||A   UCGAGUCCU UCUAUCGCG   CCU       UAGU U UAUCUG UCUUGG  CU CU CCU   UUCUCUU C CUCUCUCUCUCUGUCUCGUCGU CC         A         AAG   AGCUAAG    A A      -      AA  -  A   AGG       U A
Stem-loop sequence	AGCUCAGGAGGGAUAGCGCCUAGGAAAUCACACAUAGAUUGGAGCCACGAAGAGGAAGGGAGAAUGAGAGAGAGAGAGACAGAGCAGCUAUGCUGCUCUGUCUCUCUCUCUCACUUUCUCUUGGAUCCAUCUCAAGGUUCUGUCUAUAUAUGAUGAAUCGAUCCGAAGCGCUAUCUAUCCUGAGCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403272.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235402.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2985353	NA	coding protein	psRNATarget
JB163451.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2559767	NA	coding protein	psRNATarget
JB163733.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1397 from Patent EP2559767	NA	coding protein	psRNATarget
HI402990.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235120.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   |||||||||||||||||||| targets:10   GGAGCUCAGGAUAGAUAGCG   29 Target Full Sequence	0.0	Sequence 1115 from Patent EP2985353	NA	coding protein	psRNATarget
AY111410.1	ncRNA:20   CCUCGAGUCCUAUCUAUCGC   1   *||*=||||||||||||||* targets:618   CGAUUUCAGGAUAGAUAGCU   637 Target Full Sequence	3.0	Zea mays CL56074_1 mRNA sequence	NA	coding protein	psRNATarget