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BaseInfo

ncRNA ID novel_zma_miR8187
Species Zea mays
Class miRNA
Genome position Chr5:61140016-61140096 [-]
Reference genome RefGen_v4
Source SRR3385651
Length 21
Mature sequence(if miRNA) 61 - CCAUAGGGAUUGAGGUGGAUU - 81
Stem-loop(if miRNA) --               U    UG  AGGGAUUAAA   GAU
  CCAUAGGGAUUGAGG GGAU  GA          GAG   U
  ||||||||||||||| ||||  ||          |||
  GGUAUCCCUAACUCC CCUA  UU          UUC   U
UA               -    GU  --AGGGGAUG   AGU
Stem-loop sequence CCAUAGGGAUUGAGGUGGAUUGGAAGGGAUUAAAGAGGAUUUUGACUUGUAGGGGAUUUGAUCCCCUCAAUCCCUAUGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087370.2
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |=|||||||||||||||||||
targets:277   AGUCCACCUCAAUCCCUAUGG   297

0.0 Zea mays full-length cDNA clone ZM_BFb0056A06 mRNA, complete cds NA coding protein psRNATarget
LQ239468.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:75   AAUCCCCCUCAAUCCCUAUGG   95

1.0 Sequence 5463 from Patent EP2985353 NA coding protein psRNATarget
JB167799.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:75   AAUCCCCCUCAAUCCCUAUGG   95

1.0 Sequence 5463 from Patent EP2559767 NA coding protein psRNATarget
HI407338.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:75   AAUCCCCCUCAAUCCCUAUGG   95

1.0 Sequence 5463 from Patent EP2074227 NA coding protein psRNATarget
EZ083462.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:41   AAUCCCCCUCAAUCCCUAUGG   61

1.0 TSA: Zea mays contig19106, mRNA sequence NA coding protein psRNATarget
XM_020537815.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:2605   AAUCCCCCUCAAUCCCUAUGG   2625

1.0 PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||||||||
targets:3929   AAUCCCCCUCAAUCCCUAUGG   3949

1.0 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
LQ242010.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||=|||||||||
targets:69   AAUCCCCCUCAGUCCCUAUGG   89

2.5 Sequence 8005 from Patent EP2985353 NA coding protein psRNATarget
HI409880.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||=|||||||||
targets:69   AAUCCCCCUCAGUCCCUAUGG   89

2.5 Sequence 8005 from Patent EP2074227 NA coding protein psRNATarget
JB170341.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||=|||||||||
targets:69   AAUCCCCCUCAGUCCCUAUGG   89

2.5 Sequence 8005 from Patent EP2559767 NA coding protein psRNATarget
EU959460.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||=|||||||||
targets:1244   AAUCCCCCUCAGUCCCUAUGG   1264

2.5 Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds NA coding protein psRNATarget
NM_001154990.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||=|||||||||
targets:1244   AAUCCCCCUCAGUCCCUAUGG   1264

2.5 Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA NA coding protein psRNATarget
XM_008653299.2
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  =||||*|||||||||||||||
targets:822   GAUCCCCCUCAAUCCCUAUGG   842

1.0 PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA NA coding protein psRNATarget
LQ241947.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:82   AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2985353 NA coding protein psRNATarget
HI409817.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:82   AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2074227 NA coding protein psRNATarget
JB170278.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:82   AAUCCCCCUCAAUCCAUAUGG   102

2.5 Sequence 7942 from Patent EP2559767 NA coding protein psRNATarget
HI408824.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:83   AAUCCUCCUCAAUCCAUAUGG   103

2.5 Sequence 6949 from Patent EP2074227 NA coding protein psRNATarget
LQ240954.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:83   AAUCCUCCUCAAUCCAUAUGG   103

2.5 Sequence 6949 from Patent EP2985353 NA coding protein psRNATarget
JB169285.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:83   AAUCCUCCUCAAUCCAUAUGG   103

2.5 Sequence 6949 from Patent EP2559767 NA coding protein psRNATarget
EU951312.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:372   AAUCCCCCUCAAUCCAUAUGG   392

2.5 Zea mays clone 695515 mRNA sequence NA coding protein psRNATarget
AY104043.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:912   AAUCCCCCUCAAUCCAUAUGG   932

2.5 Zea mays PCO145885 mRNA sequence NA coding protein psRNATarget
BT068594.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:909   AAUCCCCCUCAAUCCAUAUGG   929

2.5 Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds NA coding protein psRNATarget
NM_001151506.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:939   AAUCCCCCUCAAUCCAUAUGG   959

2.5 Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA NA coding protein psRNATarget
EU972032.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:939   AAUCCCCCUCAAUCCAUAUGG   959

2.5 Zea mays clone 373636 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT061531.2
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:851   AAUCCCCCUCAAUCCAUAUGG   871

2.5 Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds NA coding protein psRNATarget
BT068463.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:1211   AAUCCCCCUCAAUCCAUAUGG   1231

2.5 Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds NA coding protein psRNATarget
EU955707.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:608   AAUCCCCCUCAAUCCAUAUGG   628

2.5 Zea mays clone 1543022 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008680349.2
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  |||||*|||||||||*|||||
targets:1971   AAUCCCCCUCAAUCCAUAUGG   1991

2.5 PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA NA coding protein psRNATarget
EU972313.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  =||||*|||||||||*|||||
targets:32   GAUCCCCCUCAAUCCAUAUGG   52

2.5 Zea mays clone 379548 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU956568.1
ncRNA:21   UUAGGUGGAGUUAGGGAUACC   1
  =*||=||||||||||*|||||
targets:1550   GUUCUACCUCAAUCCAUAUGG   1570

2.5 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
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