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BaseInfo

ncRNA ID	novel_zma_miR8177
Species	Zea mays
Class	miRNA
Genome position	Chr4:233618409-233618472 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	20
Mature sequence(if miRNA)	45 - UGCCAAAGGGGAUUUGCCCG - 64
Stem-loop(if miRNA)	--     CC    G        ----UGCG   G   GGCAA  CCCC UUGGCAGG        ACG C   |||||  |||| ||||||||        |||   CCGUU  GGGG AACCGUCC        UGC G GC     UA    A        CAUCCCCA   A
Stem-loop sequence	GGCAACCCCCCGUUGGCAGGUGCGACGGCGACGUACCCCUACCCUGCCAAAGGGGAUUUGCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KT345709.1	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   ||||||||||=||||||||| targets:566   CGGGCAAAUCUCCUUUGGCA   585 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   =|||||||||=||||||||| targets:433   UGGGCAAAUCUCCUUUGGCA   452 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   =|||||||||=||||||||| targets:515   UGGGCAAAUCUCCUUUGGCA   534 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   *|||||||||=||||||||| targets:475   GGGGCAAAUCUCCUUUGGCA   494 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
KT345709.1	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   *|||||||||=||||||||| targets:256   AGGGCAAAUCUCCUUUGGCA   275 Target Full Sequence	1.5	Zea mays putative PHO2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   ||||||||||=||||||||| targets:1470   CGGGCAAAUCUCCUUUGGCA   1489 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   =|||||||||=||||||||| targets:1337   UGGGCAAAUCUCCUUUGGCA   1356 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   =|||||||||=||||||||| targets:1419   UGGGCAAAUCUCCUUUGGCA   1438 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   *|||||||||=||||||||| targets:1379   GGGGCAAAUCUCCUUUGGCA   1398 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650020.2	ncRNA:20   GCCCGUUUAGGGGAAACCGU   1   *|||||||||=||||||||| targets:1160   AGGGCAAAUCUCCUUUGGCA   1179 Target Full Sequence	1.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme E2 24 (LOC100502171), transcript variant X1, mRNA	NA	coding protein	psRNATarget