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BaseInfo

ncRNA ID novel_zma_miR8168
Species Zea mays
Class miRNA
Genome position Chr4:170208709-170208809 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 20
Mature sequence(if miRNA) 82 - GUUUGGUUUGGUGAUUGAUG - 101
Stem-loop(if miRNA) --      CCU UG         U    C  CAAU  -AG      U   GUG
  UCAAUU   C  AAUCGAAUU CAGU UC    CC   AAGAUU CAU   U
  ||||||   |  ||||||||| |||| ||    ||   |||||| |||   U
  AGUUAG   G  UUGGUUUGA GUCG AG    GG   UUUUAG GUA   U
GU      --U GU         C    U  ---C  ACA      U   AUU
Stem-loop sequence UCAAUUCCUCUGAAUCGAAUUUCAGUCUCCAAUCCAGAAGAUUUCAUGUGUUUUUAAUGUGAUUUUACAGGCGAUGCUGCAGUUUGGUUUGGUGAUUGAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ050611.1
ncRNA:20   GUAGUUAGUGGUUUGGUUUG   1
  ||||||||||||||*|||||
targets:267   CAUCAAUCACCAAAGCAAAC   286

1.5 TSA: Zea mays contig51731, mRNA sequence NA coding protein psRNATarget
XM_008678213.2
ncRNA:20   GUAGUUAGUGGUUUGGUUUG   1
  ||*|=|*|||||||||||||
targets:68   CACCGACCACCAAACCAAAC   87

3.0 PREDICTED: Zea mays putative RAN GTPase activating family protein (LOC100191507), transcript variant X1, mRNA NA coding protein psRNATarget