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BaseInfo

ncRNA ID novel_zma_miR8163
Species Zea mays
Class miRNA
Genome position Chr4:135958283-135958461 [+]
Reference genome RefGen_v4
Source SRR3385651
Length 21
Mature sequence(if miRNA) 159 - CCUAGAAACCAAACACUCCCU - 179
Stem-loop(if miRNA) --          A               U          A                    CCA                   C     C
  GGGGUGUUUG UUUCUAGGGACUAAU UUUAGUCCCU CAUUUUAUUCCAUUUUAGUU   AAAUUGCCAAAUAUAGAAA UAAAA U
  |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||   ||||||||||||||||||| ||||| C
  CCUCACAAAC AAAGAUCCCUGAUUA AAAUCAGGGA GUAAAAUAAGGUAAAAUCAG   UUUAACGGUUUAUAUCUUU AUUUU U
UC          C               C          A                    AUA                   U     A
Stem-loop sequence GGGGUGUUUGAUUUCUAGGGACUAAUUUUUAGUCCCUACAUUUUAUUCCAUUUUAGUUCCAAAAUUGCCAAAUAUAGAAACUAAAACUCUAUUUUAUUUUCUAUAUUUGGCAAUUUAUAGACUAAAAUGGAAUAAAAUGAAGGGACUAAACAUUAGUCCCUAGAAACCAAACACUCCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087095.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:550   AGGGGGUGUUUGGUUUCUAGG   570

1.0 Zea mays full-length cDNA clone ZM_BFa0069E04 mRNA, complete cds NA coding protein psRNATarget
EZ052166.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:747   AGGGGGUGUUUGGUUUCUAGG   767

1.0 TSA: Zea mays contig53286, mRNA sequence NA coding protein psRNATarget
XM_020553397.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:547   AGGGGGUGUUUGGUUUCUAGG   567

1.0 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
DQ244473.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:962   AGGGGGUGUUUGGUUUCUAGG   982

1.0 Zea mays clone 8025 mRNA sequence NA coding protein psRNATarget
BT036582.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:810   AGGGGGUGUUUGGUUUCUAGG   830

1.0 Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds NA coding protein psRNATarget
NM_001139183.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:810   AGGGGGUGUUUGGUUUCUAGG   830

1.0 Zea mays hypothetical protein (LOC100194130), mRNA NA coding protein psRNATarget
XM_008650759.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1132   AGGGGGUGUUUGGUUUCUAGG   1152

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008650758.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1141   AGGGGGUGUUUGGUUUCUAGG   1161

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008650753.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1144   AGGGGGUGUUUGGUUUCUAGG   1164

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008650754.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1150   AGGGGGUGUUUGGUUUCUAGG   1170

1.0 PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA NA coding protein psRNATarget
EU956227.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1237   AGGGGGUGUUUGGUUUCUAGG   1257

1.0 Zea mays clone 1559264 mRNA sequence NA coding protein psRNATarget
XM_020542419.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:2139   AGGGGGUGUUUGGUUUCUAGG   2159

1.0 PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA NA coding protein psRNATarget
XM_020545045.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=||||||||||||||||
targets:1917   AGGGGGUGUUUGGUUUCUAGG   1937

1.0 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
EZ111881.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||=||||
targets:79   AGGGGGUGUUUGGUUUUUAGG   99

2.5 TSA: Zea mays contig47542, mRNA sequence NA coding protein psRNATarget
EU942443.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =|||=||||||||||||||||
targets:460   GGGGGGUGUUUGGUUUCUAGG   480

1.0 Zea mays clone 1501876 mRNA sequence NA coding protein psRNATarget
NM_001313850.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =|||=||||||||||||||||
targets:1134   GGGGGGUGUUUGGUUUCUAGG   1154

1.0 Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA NA coding protein psRNATarget
BT088358.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =|||=||||||||||||||||
targets:1134   GGGGGGUGUUUGGUUUCUAGG   1154

1.0 Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds NA coding protein psRNATarget
BT085047.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =|||=||||||||||||||||
targets:1188   GGGGGGUGUUUGGUUUCUAGG   1208

1.0 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
EZ060524.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||||||*
targets:39   AGGGGGUGUUUGGUUUCUAGU   59

2.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
EU956677.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||||||*
targets:2007   AGGGGGUGUUUGGUUUCUAGA   2027

2.0 Zea mays clone 1570443 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008680551.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||||||||||||||*||||
targets:806   AGGGAGUGUUUGGUUUAUAGG   826

1.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
EZ061563.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||*||||
targets:315   AGGGGGUGUUUGGUUUAUAGG   335

2.5 TSA: Zea mays contig62685, mRNA sequence NA coding protein psRNATarget
EU943837.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||*||||
targets:389   AGGGGGUGUUUGGUUUAUAGG   409

2.5 Zea mays clone 1689635 mRNA sequence NA coding protein psRNATarget
BT018349.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=*|||||||||||||||
targets:555   AGGGGAUGUUUGGUUUCUAGG   575

2.0 Zea mays clone EL01T0403E10.c mRNA sequence NA coding protein psRNATarget
BT016605.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||*||||
targets:951   AGGGGGUGUUUGGUUUGUAGG   971

2.5 Zea mays clone Contig438 mRNA sequence NA coding protein psRNATarget
XM_008667360.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||*|=||||||||||||||||
targets:1141   AGUGGGUGUUUGGUUUCUAGG   1161

2.0 PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA NA coding protein psRNATarget
NM_001112512.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|*||||||||||||||
targets:1540   AGGGGGCGUUUGGUUUCUAGG   1560

2.0 Zea mays Aldose reductase (pco147797a), mRNA NA coding protein psRNATarget
XM_008654984.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=|||||||||||*||||
targets:2901   AGGGGGUGUUUGGUUUGUAGG   2921

2.5 PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA NA coding protein psRNATarget
XM_020546796.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=*|||||||||||||||
targets:3399   AGGGGAUGUUUGGUUUCUAGG   3419

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546795.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=*|||||||||||||||
targets:3474   AGGGGAUGUUUGGUUUCUAGG   3494

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020546794.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=*|||||||||||||||
targets:3524   AGGGGAUGUUUGGUUUCUAGG   3544

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546793.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||||=*|||||||||||||||
targets:3561   AGGGGAUGUUUGGUUUCUAGG   3581

2.0 PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238867.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4862 from Patent EP2985353 NA coding protein psRNATarget
JB167201.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4865 from Patent EP2559767 NA coding protein psRNATarget
JB167198.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4862 from Patent EP2559767 NA coding protein psRNATarget
LQ238870.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4865 from Patent EP2985353 NA coding protein psRNATarget
HI406737.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4862 from Patent EP2074227 NA coding protein psRNATarget
HI406740.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  ||=||||||||||||||||
targets:1   GGGGUGUUUGGUUUCUAGG   19

1.0 Sequence 4865 from Patent EP2074227 NA coding protein psRNATarget
BT088053.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:800   GCGGGGUGUUUGGUUUCUAGG   820

1.0 Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds NA coding protein psRNATarget
BT039671.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1058   GCGGGGUGUUUGGUUUCUAGG   1078

1.0 Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds NA coding protein psRNATarget
EU962491.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1118   GCGGGGUGUUUGGUUUCUAGG   1138

1.0 Zea mays clone 243115 mRNA sequence NA coding protein psRNATarget
BT087555.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1172   GCGGGGUGUUUGGUUUCUAGG   1192

1.0 Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds NA coding protein psRNATarget
BT033446.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1218   GCGGGGUGUUUGGUUUCUAGG   1238

1.0 Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds NA coding protein psRNATarget
NM_001136807.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1218   GCGGGGUGUUUGGUUUCUAGG   1238

1.0 Zea mays Protein LIKE COV 2 (LOC100191373), mRNA NA coding protein psRNATarget
XM_008655999.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  =*||=||||||||||||||||
targets:1159   GCGGGGUGUUUGGUUUCUAGG   1179

1.0 PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:21   UCC-CUCACAAACCAAAGAUCC   1
  *||-|=||||||||||||||||
targets:1535   UGGUGGGUGUUUGGUUUCUAGG   1556

3.0 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020549827.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||=|||||||||||=||||
targets:1842   AUGGGGUGUUUGGUUUUUAGG   1862

2.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008674864.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||=|||||||||||=||||
targets:2217   AUGGGGUGUUUGGUUUUUAGG   2237

2.5 PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001174508.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||=|||||||||||=||||
targets:2276   AUGGGGUGUUUGGUUUUUAGG   2296

2.5 Zea mays hypothetical protein (LOC100381696), mRNA NA coding protein psRNATarget
BT062019.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||=|||||||||||=||||
targets:2276   AUGGGGUGUUUGGUUUUUAGG   2296

2.5 Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds NA coding protein psRNATarget
NM_001154575.2
ncRNA:21   UCCCUC-ACAAACCAAAGAUCC   1
  |*||||-|||||||||||||||
targets:1855   AAGGAGAUGUUUGGUUUCUAGG   1876

2.0 Zea mays uncharacterized LOC100281656 (si605087c09), mRNA NA coding protein psRNATarget
EU957463.1
ncRNA:21   UCCCUC-ACAAACCAAAGAUCC   1
  |*||||-|||||||||||||||
targets:1856   AAGGAGAUGUUUGGUUUCUAGG   1877

2.0 Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds NA coding protein psRNATarget
NM_001150110.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||*|=|||||||||||||||*
targets:534   AGAGGGUGUUUGGUUUCUAGA   554

3.0 Zea mays hypothetical protein (LOC103639532), mRNA NA coding protein psRNATarget
EU961152.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  ||*|=|||||||||||||||*
targets:534   AGAGGGUGUUUGGUUUCUAGA   554

3.0 Zea mays clone 232918 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB163501.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  *|=||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGG   19

2.0 Sequence 1165 from Patent EP2559767 NA coding protein psRNATarget
HI403040.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  *|=||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGG   19

2.0 Sequence 1165 from Patent EP2074227 NA coding protein psRNATarget
LQ235170.1
ncRNA:19   CCUCACAAACCAAAGAUCC   1
  *|=||||||||||||||||
targets:1   UGGGUGUUUGGUUUCUAGG   19

2.0 Sequence 1165 from Patent EP2985353 NA coding protein psRNATarget
NM_001139047.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||*|||||||||||*|||||
targets:1042   AGGUAGUGUUUGGUUACUAGG   1062

2.5 Zea mays uncharacterized LOC100276115 (umc1449), mRNA NA coding protein psRNATarget
BT036384.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||*|||||||||||*|||||
targets:1042   AGGUAGUGUUUGGUUACUAGG   1062

2.5 Zea mays full-length cDNA clone ZM_BFb0110F22 mRNA, complete cds NA coding protein psRNATarget
BT084832.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||*|||||||||||*|||||
targets:497   AGGUAGUGUUUGGUUACUAGG   517

2.5 Zea mays full-length cDNA clone ZM_BFb0189L01 mRNA, complete cds NA coding protein psRNATarget
BT060522.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||||||||||||||*||||
targets:1600   AAGGAGUGUUUGGUUUAUAGG   1620

1.5 Zea mays full-length cDNA clone ZM_BFb0011L14 mRNA, complete cds NA coding protein psRNATarget
BT066789.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||||||||||||||*||||
targets:1682   AAGGAGUGUUUGGUUUAUAGG   1702

1.5 Zea mays full-length cDNA clone ZM_BFb0072D03 mRNA, complete cds NA coding protein psRNATarget
NM_001175945.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||||||||||||||*||||
targets:1682   AAGGAGUGUUUGGUUUAUAGG   1702

1.5 Zea mays uncharacterized LOC100383285 (LOC100383285), mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||*|||||||||||*|||||
targets:2568   AGGUAGUGUUUGGUUACUAGG   2588

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008647122.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||*|||||||||||*|||||
targets:2957   AGGUAGUGUUUGGUUACUAGG   2977

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
EZ068389.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  *||||*||||||||||||||*
targets:34   CGGGAAUGUUUGGUUUCUAGA   54

2.0 TSA: Zea mays contig04024, mRNA sequence NA coding protein psRNATarget
NM_001138696.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*|||||||||||||||||**
targets:999   AAGGAGUGUUUGGUUUCUAUA   1019

2.5 Zea mays uncharacterized LOC100193590 (umc2776), mRNA NA coding protein psRNATarget
EU967404.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*|||||||||||||||||**
targets:999   AAGGAGUGUUUGGUUUCUAUA   1019

2.5 Zea mays clone 302545 GTPase activating protein mRNA, complete cds NA coding protein psRNATarget
NM_001147189.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*|*=||||||||||||||||
targets:1454   AUGAGGUGUUUGGUUUCUAGG   1474

2.0 Zea mays GDSL esterase/lipase APG (LOC100272736), mRNA NA coding protein psRNATarget
BT039307.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*|*=||||||||||||||||
targets:1454   AUGAGGUGUUUGGUUUCUAGG   1474

2.0 Zea mays full-length cDNA clone ZM_BFc0005C13 mRNA, complete cds NA coding protein psRNATarget
XM_020538340.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||*|||||||||||||||*
targets:2131   AAGGUGUGUUUGGUUUCUAGU   2151

2.0 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939916), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538341.1
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |*||*|||||||||||||||*
targets:2131   AAGGUGUGUUUGGUUUCUAGU   2151

2.0 PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939917), mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:21   UCCCUCACAAACCAAAGAUCC   1
  |||***|||||||||||||||
targets:759   AGGUCAUGUUUGGUUUCUAGG   779

3.0 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget