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BaseInfo

ncRNA ID	novel_zma_miR8148
Species	Zea mays
Class	miRNA
Genome position	Chr4:43385535-43385587 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	21
Mature sequence(if miRNA)	33 - CGCCUCGCCGGAGGAGGAGCU - 53
Stem-loop(if miRNA)	CUCUG      -    G UUC   UCU      UCCUCC CCGG G   CGA   G      |||||| |||| |   |||      AGGAGG GGCC C   GCU   G --UCG      A    G UCC   CCU
Stem-loop sequence	CUCUGUCCUCCCCGGGGUUCCGAUCUGGUCCUCGCCUCGCCGGAGGAGGAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT070077.2	ncRNA:21   UCGAGGAGGAGGCCGCUCCGC   1   ||||||*|||||||||||||* targets:322   AGCUCCACCUCCGGCGAGGCA   342 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0381K04 mRNA, complete cds	NA	coding protein	psRNATarget
AJ507105.1	ncRNA:21   UCGA-GGAGGAGGCCGCUCCGC   1   *|||-||||||||||||||||* targets:204   CGCUUCCUCCUCCGGCGAGGCC   225 Target Full Sequence	3.0	Zea mays mRNA for ETCHED1 protein (et1 gene)	NA	coding protein	psRNATarget
EU967301.1	ncRNA:21   UCGA-GGAGGAGGCCGCUCCGC   1   *|||-||||||||||||||||* targets:197   CGCUUCCUCCUCCGGCGAGGCC   218 Target Full Sequence	3.0	Zea mays clone 301250 zinc ribbon 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001322848.1	ncRNA:21   UCGA-GGAGGAGGCCGCUCCGC   1   *|||-||||||||||||||||* targets:269   CGCUUCCUCCUCCGGCGAGGCC   290 Target Full Sequence	3.0	Zea mays etched 1 (et1), mRNA	NA	coding protein	psRNATarget
EU953066.1	ncRNA:21   UCGA-GGAGGAGGCCGCUCCGC   1   *|||-||||||||||||||||* targets:267   CGCUUCCUCCUCCGGCGAGGCC   288 Target Full Sequence	3.0	Zea mays clone 1379812 mRNA sequence	NA	coding protein	psRNATarget
XM_008648134.2	ncRNA:21   UCGAGGAGGAGGCCG-CUCCGC   1   **|||||||||||||-|||||| targets:207   UUCUCCUCCUCCGGCCGAGGCG   228 Target Full Sequence	3.0	PREDICTED: Zea mays MADS box interactor-like (LOC103627822), mRNA	NA	coding protein	psRNATarget
BT042606.1	ncRNA:21   UCGAGGAGGAGGCCGCUCCGC   1   =||||=*|||||||||||||* targets:24   GGCUCUCCCUCCGGCGAGGCC   44 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0367E01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148616.1	ncRNA:21   UCGAGGAGGAGGCCGCUCCGC   1   =||||=*|||||||||||||* targets:24   GGCUCUCCCUCCGGCGAGGCC   44 Target Full Sequence	3.0	Zea mays Protease Do-like 10 mitochondrial (LOC100274250), mRNA	NA	coding protein	psRNATarget
XM_008649375.2	ncRNA:21   UCGAGGAGGAGGCCGCUCCGC   1   =||||=*|||||||||||||* targets:59   GGCUCUCCCUCCGGCGAGGCC   79 Target Full Sequence	3.0	PREDICTED: Zea mays Protease Do-like 10 mitochondrial (LOC100274250), transcript variant X1, mRNA	NA	coding protein	psRNATarget