Search result

BaseInfo

ncRNA ID	novel_zma_miR8145
Species	Zea mays
Class	miRNA
Genome position	Chr10:6594518-6594606 [-]
Reference genome	RefGen_v4
Source	SRR3385651
Length	19
Mature sequence(if miRNA)	71 - CUUCAUUUUUCCAAGGGAU - 89
Stem-loop(if miRNA)	--           C         UC                A     CUUCAUUUUUC AAGGGAUUC  AUUUUCCCAAGGGAAA UGA   ||||||||||| |||||||||  |||||||||||||||| ||A   GGGGUAAAAAG UUCCCUAAG  UAAAAGGGUUCUCUUU ACC UU           A         GA                A
Stem-loop sequence	CUUCAUUUUUCCAAGGGAUUCUCAUUUUCCCAAGGGAAAAUGAACCAAUUUCUCUUGGGAAAAUAGGAAUCCCUUAGAAAAAUGGGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658779.2	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||||||||||||||||=|| targets:1934   AUCCCUUGGAAAAAUGGAG   1952 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103636424 (LOC103636424), mRNA	NA	coding protein	psRNATarget
EZ080886.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||=||||||||||||||=| targets:111   AUUCCUUGGAAAAAUGAGG   129 Target Full Sequence	2.5	TSA: Zea mays contig16525, mRNA sequence	NA	coding protein	psRNATarget
NM_001149998.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||=|||||||||||||=|| targets:764   AUUCCUUGGAAAAAUGGAG   782 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276138 (LOC100276138), mRNA	NA	coding protein	psRNATarget
EU960273.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||=|||||||||||||=|| targets:764   AUUCCUUGGAAAAAUGGAG   782 Target Full Sequence	2.5	Zea mays clone 223065 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT067132.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||||=|||||||||||=|| targets:1235   AUCCUUUGGAAAAAUGGAG   1253 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0204M05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176059.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||||=|||||||||||=|| targets:1235   AUCCUUUGGAAAAAUGGAG   1253 Target Full Sequence	2.5	Zea mays putative coatomer beta subunit family protein (LOC100383405), mRNA	NA	coding protein	psRNATarget
XM_008660641.2	ncRNA:19   UAGGGAACCUUUUUACUUC   1   ||||=|||||||||||=|| targets:3174   AUCCUUUGGAAAAAUGGAG   3192 Target Full Sequence	2.5	PREDICTED: Zea mays putative coatomer beta subunit family protein (LOC100383405), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY108137.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||||||||||||||=|| targets:250   CUCCCUUGGAAAAAUGGAG   268 Target Full Sequence	2.5	Zea mays PCO128089 mRNA sequence	NA	coding protein	psRNATarget
EZ078226.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||||||||||||||=|| targets:236   CUCCCUUGGAAAAAUGGAG   254 Target Full Sequence	2.5	TSA: Zea mays contig13865, mRNA sequence	NA	coding protein	psRNATarget
EZ108668.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *||||||||||||||||=| targets:308   UUCCCUUGGAAAAAUGAGG   326 Target Full Sequence	2.5	TSA: Zea mays contig44327, mRNA sequence	NA	coding protein	psRNATarget
NM_001148509.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||||||||||||||||* targets:1078   UUCCCUUGGAAAAAUGAAA   1096 Target Full Sequence	2.0	Zea mays Polycomb group protein EMBRYONIC FLOWER 2 (gpm623), mRNA	NA	coding protein	psRNATarget
BT042414.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||||||||||||||||* targets:1078   UUCCCUUGGAAAAAUGAAA   1096 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0224B17 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670047.2	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||||||||||||||||* targets:2331   UUCCCUUGGAAAAAUGAAA   2349 Target Full Sequence	2.0	PREDICTED: Zea mays Polycomb group protein EMBRYONIC FLOWER 2 (gpm623), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176228.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|=|||||||||||||||* targets:1319   UUUCCUUGGAAAAAUGAAA   1337 Target Full Sequence	3.0	Zea mays uncharacterized LOC100383580 (LOC100383580), mRNA	NA	coding protein	psRNATarget
BT067684.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|=|||||||||||||||* targets:1319   UUUCCUUGGAAAAAUGAAA   1337 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0127D15 mRNA, complete cds	NA	coding protein	psRNATarget
EU963479.1	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|=|||||||||||||||* targets:1381   UUUCCUUGGAAAAAUGAAA   1399 Target Full Sequence	3.0	Zea mays clone 263101 mRNA sequence	NA	coding protein	psRNATarget
XM_008670855.2	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||=|||||||||||||* targets:85   UUCCUUUGGAAAAAUGAAA   103 Target Full Sequence	3.0	PREDICTED: Zea mays B-box zinc finger protein 20 (LOC103646136), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670854.2	ncRNA:19   UAGGGAACCUUUUUACUUC   1   *|||=|||||||||||||* targets:90   UUCCUUUGGAAAAAUGAAA   108 Target Full Sequence	3.0	PREDICTED: Zea mays B-box zinc finger protein 20 (LOC103646136), transcript variant X1, mRNA	NA	coding protein	psRNATarget