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BaseInfo

ncRNA ID novel_zma_miR8129
Species Zea mays
Class miRNA
Genome position Chr3:219140270-219140450 [-]
Reference genome RefGen_v4
Source SRR3385651
Length 21
Mature sequence(if miRNA) 1 - UCUAGUGCAUUCAACACCCCC - 21
Stem-loop(if miRNA) --      C                          U         A   -  A    AUUAAC   CUAACUAUUAACUAAUUUACUAAAAAUA
  GGGUGU UGAAUGCACUAGAGCUAAUAGUUAGU GGCUAAAAA UUA CU AAGA      UAG                            G
  |||||| |||||||||||||||||||||||||| ||||||||| ||| || ||||      |||
  CCCACA ACUUACGUGAUCUCGAUUAUCAAUCA CUGAUUUUU AAU GA UUCU      GGU                            C
CC      -                          -         -   C  C    ---GUA   UUAUGGGAUCGAUUAUCAAAUUGAUAAU
Stem-loop sequence GGGUGUCUGAAUGCACUAGAGCUAAUAGUUAGUUGGCUAAAAAAUUACUAAAGAAUUAACUAGCUAACUAUUAACUAAUUUACUAAAAAUAGCUAAUAGUUAAACUAUUAGCUAGGGUAUUUGGAUGUCUUCAGCUAAUUUUUAGUCACUAACUAUUAGCUCUAGUGCAUUCAACACCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170440.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:69   GGGGGUGUUUGAAUGCACUAGA   90

3.0 Sequence 8104 from Patent EP2559767 NA coding protein psRNATarget
HI409979.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:69   GGGGGUGUUUGAAUGCACUAGA   90

3.0 Sequence 8104 from Patent EP2074227 NA coding protein psRNATarget
LQ242109.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:69   GGGGGUGUUUGAAUGCACUAGA   90

3.0 Sequence 8104 from Patent EP2985353 NA coding protein psRNATarget
EZ073132.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:88   GGGGGUGUUUGAAUGCACUAGA   109

3.0 TSA: Zea mays contig08769, mRNA sequence NA coding protein psRNATarget
LQ235095.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:94   GGGGGUGUUUGAAUGCACUAGA   115

3.0 Sequence 1090 from Patent EP2985353 NA coding protein psRNATarget
HI402965.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:94   GGGGGUGUUUGAAUGCACUAGA   115

3.0 Sequence 1090 from Patent EP2074227 NA coding protein psRNATarget
JB163426.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:94   GGGGGUGUUUGAAUGCACUAGA   115

3.0 Sequence 1090 from Patent EP2559767 NA coding protein psRNATarget
JB163600.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:10   GGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1264 from Patent EP2559767 NA coding protein psRNATarget
HI403139.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:10   GGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1264 from Patent EP2074227 NA coding protein psRNATarget
LQ235269.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:10   GGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1264 from Patent EP2985353 NA coding protein psRNATarget
XM_008663424.2
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:934   GGGGGUGUUUGAAUGCACUAGA   955

3.0 PREDICTED: Zea mays MED7 transcription factor (MED7.2), transcript variant X1, mRNA NA coding protein psRNATarget
BT087743.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:965   GGGGGUGUUUGAAUGCACUAGA   986

3.0 Zea mays full-length cDNA clone ZM_BFb0181F12 mRNA, complete cds NA coding protein psRNATarget
NM_001148622.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:1116   GGGGGUGUUUGAAUGCACUAGA   1137

3.0 Zea mays MED7 transcription factor (MED7.2), mRNA NA coding protein psRNATarget
BT042628.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:1116   GGGGGUGUUUGAAUGCACUAGA   1137

3.0 Zea mays full-length cDNA clone ZM_BFb0383P13 mRNA, complete cds NA coding protein psRNATarget
BT083749.2
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:1439   GGGGGUGUUUGAAUGCACUAGA   1460

3.0 Zea mays full-length cDNA clone ZM_BFb0035A22 mRNA, complete cds NA coding protein psRNATarget
BT084681.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:335   GGGGGUGUUUGAAUGCACUAGA   356

3.0 Zea mays full-length cDNA clone ZM_BFb0157D18 mRNA, complete cds NA coding protein psRNATarget
XM_020542504.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:2339   GGGGGUGUUUGAAUGCACUAGA   2360

3.0 PREDICTED: Zea mays B3 domain-containing protein Os03g0120900 (LOC103636243), transcript variant X1, mRNA NA coding protein psRNATarget
BT067503.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:3608   GGGGGUGUUUGAAUGCACUAGA   3629

3.0 Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds NA coding protein psRNATarget
NM_001176181.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |||||||||-||||||||||||
targets:3608   GGGGGUGUUUGAAUGCACUAGA   3629

3.0 Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA NA coding protein psRNATarget
JB163498.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:10   AGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1162 from Patent EP2559767 NA coding protein psRNATarget
LQ235167.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:10   AGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1162 from Patent EP2985353 NA coding protein psRNATarget
HI403037.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:10   AGGGGUGUUUGAAUGCACUAGA   31

3.0 Sequence 1162 from Patent EP2074227 NA coding protein psRNATarget
LQ235193.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:9   UGGGGUGUUUGAAUGCACUAGA   30

3.0 Sequence 1188 from Patent EP2985353 NA coding protein psRNATarget
JB163524.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:9   UGGGGUGUUUGAAUGCACUAGA   30

3.0 Sequence 1188 from Patent EP2559767 NA coding protein psRNATarget
HI403063.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:9   UGGGGUGUUUGAAUGCACUAGA   30

3.0 Sequence 1188 from Patent EP2074227 NA coding protein psRNATarget
BT041400.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:1659   AGGGGUGUUUGAAUGCACUAGA   1680

3.0 Zea mays full-length cDNA clone ZM_BFc0115C19 mRNA, complete cds NA coding protein psRNATarget
NM_001147983.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:1659   AGGGGUGUUUGAAUGCACUAGA   1680

3.0 Zea mays zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (LOC100273565), mRNA NA coding protein psRNATarget
BT063644.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:847   UGGGGUGUUUGAAUGCACUAGA   868

3.0 Zea mays full-length cDNA clone ZM_BFc0089G02 mRNA, complete cds NA coding protein psRNATarget
NM_001175005.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  *||||||||-||||||||||||
targets:847   UGGGGUGUUUGAAUGCACUAGA   868

3.0 Zea mays uncharacterized LOC100382252 (LOC100382252), mRNA NA coding protein psRNATarget
JB163468.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |*|||||||-||||||||||||
targets:5   GAGGGUGUUUGAAUGCACUAGA   26

3.0 Sequence 1132 from Patent EP2559767 NA coding protein psRNATarget
HI403007.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |*|||||||-||||||||||||
targets:5   GAGGGUGUUUGAAUGCACUAGA   26

3.0 Sequence 1132 from Patent EP2074227 NA coding protein psRNATarget
LQ235137.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |*|||||||-||||||||||||
targets:5   GAGGGUGUUUGAAUGCACUAGA   26

3.0 Sequence 1132 from Patent EP2985353 NA coding protein psRNATarget
BT038069.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |*|||||||-||||||||||||
targets:1276   GAGGGUGUUUGAAUGCACUAGA   1297

3.0 Zea mays full-length cDNA clone ZM_BFb0210C15 mRNA, complete cds NA coding protein psRNATarget
NM_001143541.1
ncRNA:21   CCCCCACAA-CUUACGUGAUCU   1
  |*|||||||-||||||||||||
targets:1276   GAGGGUGUUUGAAUGCACUAGA   1297

3.0 Zea mays Amino acid kinase family protein (LOC100217180), mRNA NA coding protein psRNATarget
XM_020538570.1
ncRNA:21   CCCCCACAACUUACGUGAUCU   1
  |*|||||||*|||||||||||
targets:2320   GUGGGUGUUUAAUGCACUAGA   2340

1.5 PREDICTED: Zea mays mucin-1-like (LOC109939971), mRNA NA coding protein psRNATarget
XM_008666659.2
ncRNA:21   CCCCCACAACUUACGUGAUCU   1
  ***|*||||||||||||||||
targets:875   AUCGAUGUUGAAUGCACUAGA   895

2.0 PREDICTED: Zea mays serine/threonine protein phosphatase 2A regulatory subunit B''beta (LOC103643458), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546762.1
ncRNA:21   CCCCCACAACUUACGUGAUCU   1
  ***|*||||||||||||||||
targets:3638   AUCGAUGUUGAAUGCACUAGA   3658

2.0 PREDICTED: Zea mays serine/threonine protein phosphatase 2A regulatory subunit B''beta (LOC103643458), transcript variant X2, mRNA NA coding protein psRNATarget
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