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BaseInfo

ncRNA ID	novel_zma_miR8125
Species	Zea mays
Class	miRNA
Genome position	Chr2:8141622-8141732 [+]
Reference genome	RefGen_v4
Source	SRR1745812
Length	24
Mature sequence(if miRNA)	1 - AAUUCGGUUAGGAAUCGUUCCGAC - 24
Stem-loop(if miRNA)	--                    C                 G            CC   AAUUCGGUUAGGAAUCGUUC GACCUACCAAUCCGGCA AAACGAACAAGG  U   |||||||||||||||||||| ||||||||||||||||| ||||||||||||  C   UUAGGCCAAUCCUUAGCAAG CUGGGUGGUUAGGCCGU UUUGCUUGUUCU  A CG                    A                 G            AA
Stem-loop sequence	AAUUCGGUUAGGAAUCGUUCCGACCUACCAAUCCGGCAGAAACGAACAAGGCCUCAAAUCUUGUUCGUUUGUGCCGGAUUGGUGGGUCAGAACGAUUCCUAACCGGAUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001156428.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   |||||||||||||||||||||||| targets:1479   GUCGGAACGAUUCCUAACCGAAUU   1502 Target Full Sequence	0.0	Zea mays agmatine deiminase (LOC100283528), mRNA	NA	coding protein	psRNATarget
EU965022.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   |||||||||||||||||||||||| targets:1479   GUCGGAACGAUUCCUAACCGAAUU   1502 Target Full Sequence	0.0	Zea mays clone 283266 agmatine deiminase mRNA, complete cds	NA	coding protein	psRNATarget
LQ238069.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2985353	NA	coding protein	psRNATarget
HI405939.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2074227	NA	coding protein	psRNATarget
JB166401.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2559767	NA	coding protein	psRNATarget
HI405940.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238070.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2985353	NA	coding protein	psRNATarget
JB166400.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2559767	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:1448   GUCGGAACGAUUCCUAACCGGAUU   1471 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:1448   GUCGGAACGAUUCCUAACCGGAUU   1471 Target Full Sequence	1.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
XM_020549216.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:168   GUCGGAACGAUUCCUAACCGGAUU   191 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA	NA	coding protein	psRNATarget
XM_008674095.2	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:2084   GUCGGAACGAUUCCUAACCGGAUU   2107 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS69), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:3459   GUCGGAACGAUUCCUAACCGGAUU   3482 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||||||||||||||||||=||| targets:3459   GUCGGAACGAUUCCUAACCGGAUU   3482 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ109082.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   ||||*|||||||||||||||=||| targets:44   GUCGAAACGAUUCCUAACCGGAUU   67 Target Full Sequence	1.5	TSA: Zea mays contig44741, mRNA sequence	NA	coding protein	psRNATarget
XM_020547654.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   |||*||||||||||||||||=||| targets:4369   GUCAGAACGAUUCCUAACCGGAUU   4392 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100279517 (LOC100279517), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062764.2	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   |||*||||||||||||||||*||| targets:940   GUCAGAACGAUUCCUAACCGUAUU   963 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0343N04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174739.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCUUAA   1   |||*||||||||||||||||*||| targets:940   GUCAGAACGAUUCCUAACCGUAUU   963 Target Full Sequence	1.5	Zea mays uncharacterized LOC100381966 (LOC100381966), mRNA	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   CAG--CCUUGCUAAGGAUUGGCUUAA   1   |||--|||||*|||||||*||||||| targets:2447   GUCCUGGAACAAUUCCUAUCCGAAUU   2472 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   CAG--CCUUGCUAAGGAUUGGCUUAA   1   |||--|||||*|||||||*||||||| targets:2469   GUCCUGGAACAAUUCCUAUCCGAAUU   2494 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget