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BaseInfo

ncRNA ID	osa-miRf10409-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	23
Mature sequence(if miRNA)	NA - UCCCGGUUGGUAACACCAAUCGG - NA
Stem-loop(if miRNA)	C                       CC     UA UUUUUAGU CUGAUUGGUGUUAUCAACCGGGA  AAAGA  G |||||||| |||||||||||||||||||||||  |||||  A AGAAAUCA GGCUAACCACAAUGGUUGGCCCU  UUUUU  G         A                       AA     CC
Stem-loop sequence	UUUUUAGUCCUGAUUGGUGUUAUCAACCGGGACCAAAGAUAGAGCCUUUUUAAUCCCGGUUGGUAACACCAAUCGGAACUAAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||||||||||||||||||| targets:158   CCGGUUGGUGUUACCAACCGGGA   180 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=|||||*||||||||||||| targets:115   CCGGUUGGUUUUACCAACCGGGA   137 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
HI404286.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   =|||||||||||||||||=|||* targets:5   UCGAUUGGUGUUACCAACUGGGU   27 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   =|||||||||||||||||=|||* targets:5   UCGAUUGGUGUUACCAACUGGGU   27 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
JB164747.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   =|||||||||||||||||=|||* targets:5   UCGAUUGGUGUUACCAACUGGGU   27 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||||||*|||||||||||| targets:54   CCGGUUGGUGCUACCAACCGGGA   76 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
JB164979.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||||||*|||||||||||| targets:54   CCGGUUGGUGCUACCAACCGGGA   76 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404518.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||||||*|||||||||||| targets:54   CCGGUUGGUGCUACCAACCGGGA   76 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||*|||||||||||||||| targets:917   CCGGUUUGUGUUACCAACCGGGA   939 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
AK288377.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=|||||||||||||||*||| targets:1387   CCGGUUGGUGUUACCAACCUGGA   1409 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||*|||||||||||||||| targets:2392   CCGGUUAGUGUUACCAACCGGGA   2414 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=|||||**|||||||||||| targets:1380   CCGGUUGGUAAUACCAACCGGGA   1402 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=|||||||||||||||||*| targets:1841   CCGGUUGGUGUUACCAACCGGAA   1863 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||-||||||||||||||||||| targets:2400   CCG-UUGGUGUUACCAACCGGGA   2421 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=|||*|||||||||||||*| targets:81   CCGGUUGAUGUUACCAACCGGUA   103 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
AK288624.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   |||=||*||||||||||||*||| targets:4964   CCGGUUAGUGUUACCAACCAGGA   4986 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:23   GGCUAA-CCACAAUGGUUGGCCCU   1   ||*||*-||||||||||||||||| targets:61   CCCAUCCGGUGUUACCAACCGGGA   84 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK061057.1	ncRNA:23   GGCUAACCACAAUGGUUGGCCCU   1   ==|=|||||**|||||||||||| targets:364   UUGGUUGGUAAUACCAACCGGGA   386 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-205-H07, full insert sequence	NA	coding protein	psRNATarget