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BaseInfo

ncRNA ID	novel_zma_miR8119
Species	Zea mays
Class	miRNA
Genome position	Chr3:147286049-147286095 [+]
Reference genome	RefGen_v4
Source	SRR3385651
Length	22
Mature sequence(if miRNA)	1 - GAUCAGCCCGACUAAUCGCGAC - 22
Stem-loop(if miRNA)	--G   A C              C    AUC G CCGACUAAUCGCGA U    ||| | ||||||||||||||    UAG C GGCUGAUUAGCGCU A GUA   - A              A
Stem-loop sequence	GAUCAGCCCGACUAAUCGCGACUAAUCGCGAUUAGUCGGACGAUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008646837.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:264   AUCGCGAUUAGUCGGGCUGGUC   285 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103626427 (LOC103626427), mRNA	NA	coding protein	psRNATarget
XM_020552691.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_008677401.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:2292   AUCGCGAUUAGUCGGGCUGGUC   2313 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103651696 (LOC103651696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552690.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008680911.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020552693.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4205   AUCGCGAUUAGUCGGGCUGGUC   4226 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_008666242.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008666240.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008653826.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4222   AUCGCGAUUAGUCGGGCUGGUC   4243 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X14, mRNA	NA	coding protein	psRNATarget
XM_008653825.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4225   AUCGCGAUUAGUCGGGCUGGUC   4246 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X13, mRNA	NA	coding protein	psRNATarget
XM_008653824.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4353   AUCGCGAUUAGUCGGGCUGGUC   4374 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020541074.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4796   AUCGCGAUUAGUCGGGCUGGUC   4817 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_008653820.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4796   AUCGCGAUUAGUCGGGCUGGUC   4817 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541072.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X9, mRNA	NA	coding protein	psRNATarget
XM_020541079.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_020541076.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X15, mRNA	NA	coding protein	psRNATarget
XM_020541071.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_020541073.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020541075.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X12, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:2504   AUCGCGAUUAGUCGGGCUGGUC   2525 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_020541070.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020541069.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020541068.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008653823.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5223   AUCGCGAUUAGUCGGGCUGGUC   5244 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541066.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:5315   AUCGCGAUUAGUCGGGCUGGUC   5336 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g62890 (LOC103631971), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008662044.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:7065   AUCGCGAUUAGUCGGGCUGGUC   7086 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546483.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:7065   AUCGCGAUUAGUCGGGCUGGUC   7086 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103639282 (LOC103639282), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552695.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4034   AUCGCGAUUAGUCGGGCUGGUC   4055 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X16, mRNA	NA	coding protein	psRNATarget
XM_008680903.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||||||||||||||||||=|| targets:4152   AUCGCGAUUAGUCGGGCUGGUC   4173 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like (LOC103654097), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540426.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:831   GUCGCGAUUAGUCGGUCUGAUC   852 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020540423.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:831   GUCGCGAUUAGUCGGUCUGAUC   852 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540425.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:831   GUCGCGAUUAGUCGGUCUGAUC   852 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020540424.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:742   GUCGCGAUUAGUCGGUCUGAUC   763 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020540431.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:831   GUCGCGAUUAGUCGGUCUGAUC   852 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X10, mRNA	NA	coding protein	psRNATarget
XM_020540422.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:831   GUCGCGAUUAGUCGGUCUGAUC   852 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100277363 (LOC100277363), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654484.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||||||||||||||*|||||| targets:159   GUCGCGAUUAGUCGGUCUGAUC   180 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103632744 (LOC103632744), mRNA	NA	coding protein	psRNATarget
JB163647.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||*|||||||||||*|||||| targets:50   GUCACGAUUAGUCGGCCUGAUC   71 Target Full Sequence	2.5	Sequence 1311 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235316.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||*|||||||||||*|||||| targets:50   GUCACGAUUAGUCGGCCUGAUC   71 Target Full Sequence	2.5	Sequence 1311 from Patent EP2985353	NA	coding protein	psRNATarget
HI403186.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   |||*|||||||||||*|||||| targets:50   GUCACGAUUAGUCGGCCUGAUC   71 Target Full Sequence	2.5	Sequence 1311 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||*|||||||||||||||=|| targets:2322   AUCACGAUUAGUCGGGCUGGUC   2343 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   *||*|||||||||||||||=|| targets:2322   AUCACGAUUAGUCGGGCUGGUC   2343 Target Full Sequence	2.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU948297.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   ***|||||||*||||||||||| targets:190   AGAGCGAUUAAUCGGGCUGAUC   211 Target Full Sequence	1.5	Zea mays clone 372516 mRNA sequence	NA	coding protein	psRNATarget
XM_020552568.1	ncRNA:22   CAGCGCUAAUCAGCCCGACUAG   1   ***|||||||*||||||||||| targets:1351   AGAGCGAUUAAUCGGGCUGAUC   1372 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109946029 (LOC109946029), mRNA	NA	coding protein	psRNATarget